DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and AT3G06970

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_187353.2 Gene:AT3G06970 / 819882 AraportID:AT3G06970 Length:317 Species:Arabidopsis thaliana


Alignment Length:273 Identity:58/273 - (21%)
Similarity:97/273 - (35%) Gaps:100/273 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIH 179
            ||..|||||.|:..||.:|::.||||||.:.||.::.:....|.:|:||:||:  |.|..|..:.
plant     9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFR--DYVSTVRALQ 71

  Fly   180 FHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYGELVVWGSSHAHSTAATSAAAAGLLPSSL 244
                |:|.:                    ..||                |...:.|:||      
plant    72 ----NSKPI--------------------IDGR----------------TTNCNLASAG------ 90

  Fly   245 AAAASVLQQQQQQQQQQQQQQQQQQQHHQQLH---------HTHPQSPAHSHAH-HPHTHSH--S 297
                                 .:|..:|..|:         |.:.|:|.|...: .|||.:|  .
plant    91 ---------------------AKQNMNHPNLNGSFNYVIPPHQYQQAPQHVIPYCPPHTWNHVWG 134

  Fly   298 QLLGSLRYTP---YP---------LPAHL-----SAAAVVVAQQQHHHQQQQQQQQQQQQQQVVA 345
            |.:......|   ||         ...||     :...|:::...  ....|.:...:..|:::|
plant   135 QYIYMYNNNPCYYYPTQMIHNRSDFMTHLAWHQTNRRPVIISTPP--RSSVQTESISETDQELIA 197

  Fly   346 AQQQHQQQQSLAQ 358
            ....|..::::.:
plant   198 DVAHHDNEEAVTK 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990
RRM2_MSI 119..192 CDD:240769 28/72 (39%)
AT3G06970NP_187353.2 PABP-1234 <3..182 CDD:130689 54/243 (22%)
RRM_SF 12..87 CDD:473069 31/116 (27%)
Blue background indicates that the domain is not in the aligned region.

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