DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and AT2G21440

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_565513.1 Gene:AT2G21440 / 816683 AraportID:AT2G21440 Length:1003 Species:Arabidopsis thaliana


Alignment Length:415 Identity:68/415 - (16%)
Similarity:140/415 - (33%) Gaps:130/415 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 DGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHR 159
            ||::..|..|             ..:.|.||....|...::..|.:.||:....|:.:|.::.||
plant    10 DGEEKSPHAA-------------ATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61

  Fly   160 GFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYGELVVWGSS 224
            ||.||.|..::.|::..|:.    |...|..::...|:.....:|.:.|.  ::|.| :.|..:|
plant    62 GFAFVKFALQEDVNRAIELK----NGSTVGGRRITVKQAAHRPSLQERRT--KAAEG-ISVPDNS 119

  Fly   225 HAHSTAATSAAAAGLLPSSLAAAASVLQQQQQQQQQQQQQQQQQQQHHQQLHHTHPQSPA-HSHA 288
            ...|...||      :|.:        .::....:::.::..::::..:.:.....:.|. ...|
plant   120 QGQSDKDTS------IPET--------DEKVSPPEKKLEKPVERKKVEKPIERKQVEKPVERKKA 170

  Fly   289 HHPHTHSHSQLLGSLRYTPYPLPAHLSAAAVVVAQQQHHHQQQQQQQQQQQQQQVVAAQQQHQQQ 353
            ..|                            :..:|.....:::|.::..:::||....::.|.:
plant   171 EKP----------------------------IELKQVEKPFERKQVEKPVERKQVEKPVERKQVE 207

  Fly   354 QSLAQVVAAAAGAAPGLLPLANPAPPATPSLLQFAAGQSNAALANSLYADA--AAVVGYKRLLAA 416
            :                 |:....|                   ..|:.|.  ......|:.:|.
plant   208 K-----------------PIERKRP-------------------TKLHVDLPDKETCSDKQRVAR 236

  Fly   417 AAVSSGLRAPTTALGALQAAAANVPAAAAAAQLQQAQLRQNAALAAAHYPLSELLAMQGGM---- 477
            ..:..||                  |.|..|::..:::::...:.:..|||.:....|.|:    
plant   237 TVIFGGL------------------ANAEMAEVVHSRVKEIGTVCSVRYPLPKEELQQNGLTQDG 283

  Fly   478 ---EMGA----GANSAAAAAASLYQ 495
               |..|    ...||.||.|.|:|
plant   284 CRAEASAVLFTSVKSACAAVAKLHQ 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 3/9 (33%)
RRM2_MSI 119..192 CDD:240769 20/72 (28%)
AT2G21440NP_565513.1 RRM1_RBM28_like 21..99 CDD:409847 21/81 (26%)
ELAV_HUD_SF 24..411 CDD:273741 64/388 (16%)
RRM2_RBM28_like 332..408 CDD:409848
RRM3_RBM28_like 561..642 CDD:409849
RRM4_RBM28_like 713..810 CDD:409850
PTZ00121 <813..>968 CDD:173412
Blue background indicates that the domain is not in the aligned region.

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