DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and tia1

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_997793.1 Gene:tia1 / 793165 ZFINID:ZDB-GENE-030131-1506 Length:386 Species:Danio rerio


Alignment Length:240 Identity:60/240 - (25%)
Similarity:103/240 - (42%) Gaps:42/240 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SPSEVPNDPGK---MFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPN 81
            |||....|...   :|:|.||.:.:.:.:|..|..:|.||:|.|:||..|.:|:|:|||:|.:..
Zfish    84 SPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 148

  Fly    82 SVDKVLTQ-GTHELDGKKVDPKVAFPRRAHPKMV--TRTK----------------KIFVGGLSA 127
            ..:..:.| |...|.|:::....|..:...||..  |.||                .::.||::.
Zfish   149 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTT 213

  Fly   128 PTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQS-EDVVDKVCEIHFHEINNKMVEC- 190
            ..|.:.::..|..||.|.:..:..||      |:.||.|.| |.....:..::...:...:|:| 
Zfish   214 GLTEQLMRQTFSPFGQIMEVRVFPDK------GYSFVRFNSHESAAHAIVSVNGTSLEGHIVKCY 272

  Fly   191 ------KKAQP-KEVMLPANLAKTRAAGRSAYGELVVWGSSHAHS 228
                  ....| ::|.:|.......||  ..||:   ||..:.::
Zfish   273 WGKETTDMVSPMQQVQVPQQSKVGFAA--QPYGQ---WGQWYGNA 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 24/78 (31%)
RRM2_MSI 119..192 CDD:240769 17/80 (21%)
tia1NP_997793.1 RRM1_TIA1 9..82 CDD:410027
RRM2_TIA1 94..171 CDD:410030 24/76 (32%)
RRM3_TIA1 204..275 CDD:410032 17/76 (22%)
Blue background indicates that the domain is not in the aligned region.

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