DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and Hnrnpa0

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_084148.1 Gene:Hnrnpa0 / 77134 MGIID:1924384 Length:305 Species:Mus musculus


Alignment Length:170 Identity:75/170 - (44%)
Similarity:101/170 - (59%) Gaps:2/170 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHEL 94
            |:|||||:.|||...||.:|..:|.:::.:|:.:|.|:|||.|||||:|:....|..:....|.:
Mouse     8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAV 72

  Fly    95 DGKKVDPKVAFPRR--AHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNR 157
            ||..|:.|.|..|.  |.|....:.||:|||||.......|:..:|.|||.:|.|.::.|||:.:
Mouse    73 DGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGK 137

  Fly   158 HRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197
            .||||||.|||.|..||...:.||.|....||.|||.|||
Mouse   138 KRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 31/74 (42%)
RRM2_MSI 119..192 CDD:240769 33/72 (46%)
Hnrnpa0NP_084148.1 RRM1_hnRNPA0 5..83 CDD:409764 31/74 (42%)
RRM_SF 99..178 CDD:473069 39/79 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..211 75/170 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 265..305
Blue background indicates that the domain is not in the aligned region.

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