DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and cirbpb

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001035411.2 Gene:cirbpb / 678563 ZFINID:ZDB-GENE-030131-5841 Length:206 Species:Danio rerio


Alignment Length:78 Identity:34/78 - (43%)
Similarity:52/78 - (66%) Gaps:4/78 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQG 90
            :|.||:||||||:.|:.:||.:.|.:||.|::..|::|..|.||||||||||.:|......:.  
Zfish     2 SDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMA-- 64

  Fly    91 THELDGKKVDPKV 103
              .::||:||.::
Zfish    65 --AMNGKQVDGRM 75

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 32/74 (43%)
RRM2_MSI 119..192 CDD:240769
cirbpbNP_001035411.2 RRM_CIRBP_RBM3 5..83 CDD:409883 33/75 (44%)
Blue background indicates that the domain is not in the aligned region.

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