DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and Rbm24

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001074894.1 Gene:Rbm24 / 666794 MGIID:3610364 Length:236 Species:Mus musculus


Alignment Length:343 Identity:80/343 - (23%)
Similarity:111/343 - (32%) Gaps:121/343 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIH 179
            |...|||||||...||...::.|||.||.||:|:::.|:||.:.||:||||.......::.|   
Mouse     8 TTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC--- 69

  Fly   180 FHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYGELVVWGSSHAHSTAATSAAAAGLLPSSL 244
              :..|.:::.:||.       .|||                                     .|
Mouse    70 --KDPNPIIDGRKAN-------VNLA-------------------------------------YL 88

  Fly   245 AAAASVLQQQQQQQQQQQQQQQQQQQHHQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPYP 309
            .|...::|.......||......|:......|:.:||:........||....:....:..|..|.
Mouse    89 GAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYT 153

  Fly   310 LPAHLSAAAVVVAQQQHHHQQQQQQQQQQQQQQVVAAQQQHQQQQSLAQVVAAAAGAAPGLLPLA 374
            ..|:                                           ||..||||.||       
Mouse   154 GAAY-------------------------------------------AQYSAAAAAAA------- 168

  Fly   375 NPAPPATPSLLQFAAGQSNAALANSLYADAAAVVGYKRLLAAAAVSSGLRAPTTAL--GALQAAA 437
                             :.||.....||.:.|..||   :.....|..::.|.||.  |...|||
Mouse   169 -----------------AAAAYDQYPYAASPAAAGY---VTTGGYSYAVQQPITAAAPGTAAAAA 213

  Fly   438 ANVPAAAAAAQLQQAQLR 455
            |...||||..|.|..||:
Mouse   214 AAAAAAAAFGQYQPQQLQ 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990
RRM2_MSI 119..192 CDD:240769 28/72 (39%)
Rbm24NP_001074894.1 RRM_RBM24_RBM38_like 11..86 CDD:409818 31/86 (36%)
Necessary for interaction with EIF4E. /evidence=ECO:0000250|UniProtKB:Q9BX46 175..199 6/26 (23%)
Blue background indicates that the domain is not in the aligned region.

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