DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and SRSF4

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_005617.2 Gene:SRSF4 / 6429 HGNCID:10786 Length:494 Species:Homo sapiens


Alignment Length:368 Identity:69/368 - (18%)
Similarity:144/368 - (39%) Gaps:80/368 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHEL 94
            :::||.||:|.....:..:|..||.|.|..:        ..|:|||.|.|....|    ...:||
Human     3 RVYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDAD----DAVYEL 55

  Fly    95 DGKKV-----------DPK-----------VAFPRRAHPKM--VTRTK-KIFVGGLSAPTTLEDV 134
            :||.:           .|:           ..:.|....|.  .|||: ::.|..||:..:.:|:
Human    56 NGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDL 120

  Fly   135 KSYFEQFGPIEDAMLMFDKQTNRHRG---FGFVTFQSEDVVDKVCE-IHFHEINN---KMVECKK 192
            |.|..|.|.:..|        :.|:|   .|.:.|.|...:.:..| :...|:|.   ::||.|.
Human   121 KDYMRQAGEVTYA--------DAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKP 177

  Fly   193 AQPKEVMLPANLAKTRAAGRSAYG--ELVVWGSSHAHSTAATSAAAAGLLPSSLAAAASVLQQQQ 255
            ...:......:.:.:|:..||.:.  .....|||.:..:.:.|.:.:|    |.:.:.|..:.|.
Human   178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSG----SRSRSKSRSRSQS 238

  Fly   256 QQQQQQQQQQQQQQQHHQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPYPLPAHLSAAAVV 320
            :.:.::::.:...::..:...|:..:|.:.|.........::..:|..:                
Human   239 RSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPK---------------- 287

  Fly   321 VAQQQHHHQQQQQQQQQQQQQQVV-----AAQQQHQQQQSLAQ 358
             ::....|:.:.:.:.:.|:::|.     :..:...|::||.|
Human   288 -SRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQ 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 22/96 (23%)
RRM2_MSI 119..192 CDD:240769 19/79 (24%)
SRSF4NP_005617.2 RRM1_SRSF4 1..87 CDD:410007 22/95 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 72..95 2/22 (9%)
RRM2_SRSF4_like 104..175 CDD:410012 18/78 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 169..494 25/182 (14%)

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