DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and HNRNPA1L3

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001383170.1 Gene:HNRNPA1L3 / 642659 HGNCID:48778 Length:320 Species:Homo sapiens


Alignment Length:202 Identity:82/202 - (40%)
Similarity:121/202 - (59%) Gaps:5/202 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SPSEVPNDP---GKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPN 81
            |.||.|.:|   .|:||||||::|:.||||.:|.::|.:::.:||:||.|:|||||||||::...
Human     2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66

  Fly    82 SVDKVLTQGTHELDGKKVDPKVAFPRR--AHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPI 144
            .||..:....|::||:.|:||.|..|.  ..|......|||||||:...|....::.||||:|.|
Human    67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPDAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131

  Fly   145 EDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRA 209
            |...:|.|:.:.:.|||.||||...|.|||:....:|.:|....|.:||..|:.|..|:.::...
Human   132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGR 196

  Fly   210 AGRSAYG 216
            :|...:|
Human   197 SGSGNFG 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 36/74 (49%)
RRM2_MSI 119..192 CDD:240769 30/72 (42%)
HNRNPA1L3NP_001383170.1 RRM1_hnRNPA1 12..92 CDD:410154 37/79 (47%)
RRM2_hnRNPA3 105..184 CDD:409996 33/78 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..218 5/22 (23%)
HnRNPA1 255..292 CDD:463312
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 271..320
Blue background indicates that the domain is not in the aligned region.

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