DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and msi1b

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_073765489.1 Gene:msi1b / 541389 ZFINID:ZDB-GENE-050320-86 Length:349 Species:Danio rerio


Alignment Length:420 Identity:181/420 - (43%)
Similarity:223/420 - (53%) Gaps:100/420 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVD 84
            |.|:.|:||.|||||||||||:.|.|:|||.::|::.|:|||:||.|:||||||||||.|...||
Zfish    11 SSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVD 75

  Fly    85 KVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAML 149
            |||.|..||||.|.:||||||||||.||:|||||||||||||..||:||||.||:|||.::||||
Zfish    76 KVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAML 140

  Fly   150 MFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAA---- 210
            ||||.||||||||||||::||||:||||||||||||||||||||||||||.|...::.||.    
Zfish   141 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSSRGRARVMPY 205

  Fly   211 GRSAY----GELVVWGSSHAHSTAATSAAAAGLLPSSLAAAASVLQQQQQQQQQQQQQQQQQQQH 271
            |..|:    |.|   |.....:|.....:...|.|.                     ...|..:.
Zfish   206 GMDAFMLGIGML---GYPGFQATTYAGRSYTSLTPG---------------------YTYQFPEF 246

  Fly   272 HQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPY-PLPAHLSAAAVVVAQQQHHHQQQQQQQ 335
            |.:      ::|..:..|.|.       |.::..|.| |:.|..:|||||               
Zfish   247 HLE------RTPLLTSPHPPE-------LTAIPLTAYNPMAAAAAAAAVV--------------- 283

  Fly   336 QQQQQQQVVAAQQQHQQQQSLAQVVAAAAGAAP----GLLPLANPAPPATPSLLQFAAGQSNAAL 396
                                        .|:.|    |.|..::|.|.|.   |...|.|.:|..
Zfish   284 ----------------------------RGSTPSRSAGFLGTSSPGPMAD---LYGTANQESAVS 317

  Fly   397 ANSLYADAAAVVGYKRLLA----AAAVSSG 422
            :....|..|...|:...|.    |.|.::|
Zfish   318 SYLSAASPAPSTGFSHSLGGPLIATAFTNG 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 50/74 (68%)
RRM2_MSI 119..192 CDD:240769 60/72 (83%)
msi1bXP_073765489.1 None

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