DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and SC35

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster


Alignment Length:112 Identity:34/112 - (30%)
Similarity:52/112 - (46%) Gaps:7/112 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDP 80
            ||...|....:....:.:..|:::|:||.||..|.|.|::.:..:.:|..||.||||.||.|.|.
  Fly    10 LGAARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDK 74

  Fly    81 NSVDKVLTQGTHELDGKKVDP---KVAFPRRAHPKMVTRTKKIFVGG 124
            ...:..|    ..:||:.:|.   :|...|...|...||:.....||
  Fly    75 RDAEDAL----EAMDGRMLDGRELRVQMARYGRPSSPTRSSSGRRGG 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 25/77 (32%)
RRM2_MSI 119..192 CDD:240769 2/6 (33%)
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 24/75 (32%)

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