DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and msi1a

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001430346.1 Gene:msi1a / 503755 ZFINID:ZDB-GENE-050306-36 Length:347 Species:Danio rerio


Alignment Length:419 Identity:178/419 - (42%)
Similarity:218/419 - (52%) Gaps:108/419 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVD 84
            |..:.|:||.|||||||||||:.|.|::||.::|::.|.|||:||.|:|||||||||:.|...||
Zfish    13 STQDSPHDPCKMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVD 77

  Fly    85 KVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAML 149
            |||.|..||||.|.:||||||||||.||:|||||||||||||..||:||||.||:|||.::||||
Zfish    78 KVLAQNRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAML 142

  Fly   150 MFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAA---- 210
            ||||.||||||||||||::||||:||||||||||||||||||||||||||.|...|:.|:.    
Zfish   143 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGTARGRSRVMPY 207

  Fly   211 GRSAYGELVVWGSSHAHSTAATSAAA--AGLLPSSLAAAASVLQQQQQQQQQQQQQQQQQQQHHQ 273
            |..|: .|.:....:....|||.|:.  .|:.|.                     ...|..:.|.
Zfish   208 GMDAF-MLGIGMLGYPGFQAATYASRGYTGITPG---------------------YTYQFPEFHL 250

  Fly   274 QLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPYPLPAHLSAAAVVVAQQQHHHQQQQQQQQQQ 338
            :      ::|..:..|.|            ..|..||.|:...||...|                
Zfish   251 E------RTPLLTSTHPP------------EITAIPLTAYGPMAAAAAA---------------- 281

  Fly   339 QQQQVVAAQQQHQQQQSLAQVVAAAAGAAPG-LLPLANPAPPATPSLLQFAAGQSNAALANSLYA 402
                                  |...|:.|. .|..::|.|.|.   |..||.|.:|.   |.|.
Zfish   282 ----------------------AVVRGSTPSRFLGTSSPGPMAD---LYAAASQESAV---SSYI 318

  Fly   403 DAAAVVGYKRLLAAAAVSSGLRAPTTALG 431
            .||:                 .||:|..|
Zfish   319 SAAS-----------------PAPSTGFG 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 48/74 (65%)
RRM2_MSI 119..192 CDD:240769 60/72 (83%)
msi1aNP_001430346.1 None

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