DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and msi1

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_012816886.1 Gene:msi1 / 496961 XenbaseID:XB-GENE-490596 Length:347 Species:Xenopus tropicalis


Alignment Length:430 Identity:180/430 - (41%)
Similarity:218/430 - (50%) Gaps:128/430 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVD 84
            ||.:..:||.|||||||||||:.|.||:||..:||:.|.:||:||.|:||||||||||.|...||
 Frog    11 SPPDSAHDPCKMFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75

  Fly    85 KVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAML 149
            |||.|..||||.|.:||||||||||.||||||||||||||||..||:||||.||||||.::||||
 Frog    76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140

  Fly   150 MFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAA---- 210
            ||||.||||||||||||:.||:|:|||:||||||||||||||||||||||.|....:.|:.    
 Frog   141 MFDKTTNRHRGFGFVTFEGEDIVEKVCDIHFHEINNKMVECKKAQPKEVMSPTGSVRGRSRVMPY 205

  Fly   211 GRSAYGELVVWGSSHAHSTAATSAAAA--GLLPSSLAAAASVLQQQQQQQQQQQQQQQQQQQHHQ 273
            |..|: .|.:....:....|||.|:.:  |:.|.                               
 Frog   206 GMDAF-MLGIGMLGYPGFQAATYASRSYTGIAPG------------------------------- 238

  Fly   274 QLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPYP----LPAHLSAAAVVVAQQQHHHQQQQQQ 334
                              :|:...:.  .:..||.|    || .|:|..:.              
 Frog   239 ------------------YTYQFPEF--RVERTPLPGAPVLP-ELTAIPLT-------------- 268

  Fly   335 QQQQQQQQVVAAQQQHQQQQSLAQVVAAAA----GAAP----GLLPLANPAPPATPSLLQFAAGQ 391
                                :...|.||||    |:.|    |.|..::|.|.|.   |..||.|
 Frog   269 --------------------AYGPVAAAAAAVVRGSTPTRTGGFLGTSSPGPMAE---LYGAANQ 310

  Fly   392 SNAALANSLYADAAAVVGYKRLLAAAAVSSGLRAPTTALG 431
            .:|.   |.|..||:                 .||:|..|
 Frog   311 ESAV---SSYISAAS-----------------PAPSTGFG 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 50/74 (68%)
RRM2_MSI 119..192 CDD:240769 59/72 (82%)
msi1XP_012816886.1 RRM1_MSI1 20..96 CDD:241203 50/75 (67%)
PABP-1234 <32..324 CDD:130689 161/401 (40%)
RRM2_MSI 110..183 CDD:240769 59/72 (82%)

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