DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and hnrnpa1

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_012812298.1 Gene:hnrnpa1 / 496507 XenbaseID:XB-GENE-493963 Length:362 Species:Xenopus tropicalis


Alignment Length:208 Identity:83/208 - (39%)
Similarity:129/208 - (62%) Gaps:15/208 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 SEVPNDP---GKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV 83
            ||.|.:|   .|:||||||::|:.||||::|.::|.:::.:||:||.::|||||||||:|..:.|
 Frog     4 SEAPKEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSTDEV 68

  Fly    84 DKVLTQGTHELDGKKVDPKVAFPRR--AHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIED 146
            |..::...|::||:.|:||.|..|.  :.|......|||||||:...|....::.||||:|.||.
 Frog    69 DAAMSARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEHHLREYFEQYGKIEV 133

  Fly   147 AMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRA-- 209
            ..:|.|:.:.:.|||.||||:..|.|||:....:|.:||...|.:||..|:.|  |:::.::.  
 Frog   134 IEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNCEVRKALSKQEM--ASVSGSQRGR 196

  Fly   210 ------AGRSAYG 216
                  :||..:|
 Frog   197 GGSGNFSGRGGFG 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 36/74 (49%)
RRM2_MSI 119..192 CDD:240769 31/72 (43%)
hnrnpa1XP_012812298.1 RRM1_hnRNPA1 12..92 CDD:410154 37/79 (47%)
RRM_SF 105..184 CDD:473069 34/78 (44%)
HnRNPA1 <315..>334 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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