DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and HNRNPM

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_005959.2 Gene:HNRNPM / 4670 HGNCID:5046 Length:730 Species:Homo sapiens


Alignment Length:248 Identity:53/248 - (21%)
Similarity:93/248 - (37%) Gaps:57/248 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QQQQQQQVELG--PCSPSEVPNDPGKMFIGGLSWQTSPESLRDYF-GRYGDISEAMVMKDPTTRR 68
            ::::::.::.|  ...|...|....:.||..:.:....:||:|.. .:.|:::...::.| ...:
Human    47 EKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD-AEGK 110

  Fly    69 SRGFGFVTFSDPNSVDK---VLTQGTHELDGK----KVDPKVAFPRRAHPKMVTRT--------- 117
            |||...|.|....|:.|   ||.:  |.|.|:    |.||.....|||..|::..|         
Human   111 SRGCAVVEFKMEESMKKAAEVLNK--HSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGG 173

  Fly   118 ------------------------------KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFD 152
                                          ..:||..|......:.:|..|...|.:..|.::.|
Human   174 PGMITIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED 238

  Fly   153 KQTNRHRGFGFVTF-QSEDVVDKVCEIHFHEINNKMVECK---KAQPKEVMLP 201
            |. .:.||.|.||| ||.:.|..:...:...:.::.:..|   :|.||....|
Human   239 KD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFP 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 22/82 (27%)
RRM2_MSI 119..192 CDD:240769 19/76 (25%)
HNRNPMNP_005959.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..62 1/14 (7%)
HnRNP_M_NLS 41..70 CDD:463289 3/22 (14%)
RRM1_hnRNPM 72..147 CDD:410058 20/77 (26%)
RRM2_hnRNPM 204..279 CDD:410060 19/75 (25%)
27 X 6 AA repeats of [GEVSTPAN]-[ILMV]-[DE]-[RH]-[MLVI]-[GAV] 400..608
RRM3_hnRNPM 654..730 CDD:410062
Blue background indicates that the domain is not in the aligned region.

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