Protein Alignment Rbp6 and trv

DIOPT Version :10

• Sequence 1: NP_001097631.1
• Gene: Rbp6 / 39919
• FlyBaseID: FBgn0260943
• Length: 499
• Species: Drosophila melanogaster
• Sequence 2: NP_001163754.3
• Gene: trv / 43362
• FlyBaseID: FBgn0085391
• Length: 651
• Species: Drosophila melanogaster
• Alignment Length: 398
• Identity: 104/398 - (26%)
• Similarity: 156/398 - (39%)
• Gaps: 104/398 - (26%)

  Fly    31 MFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELD 95
            :|:|.||.:...:.||:.|..:|:||:..|::||.|.:|:|:|||:|...:..:..:|....:..
  Fly   314 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWL 378

  Fly    96 GKKVDPKVAFPRRAHPKMVTRTK----------------KIFVGGL-SAPTTL--EDVKSYFEQF 141
            |.: ..:..:..|..|......|                .::|||: ||.|.|  |.::..|..:
  Fly   379 GSR-SIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPY 442

  Fly   142 GPIEDAMLMFDKQTNRHRGFGFVTFQS-EDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLA 205
            |.|::..:..||      |:.||.|.: |.....:..:|..|||.:.|:|  :..||...|.| |
  Fly   443 GAIQEIRVFKDK------GYAFVRFSTKEAATHAIVGVHNTEINAQPVKC--SWGKESGDPNN-A 498

  Fly   206 KTRAAGRSAYGELVVWGSSHAHSTAATSAAAAGLLPSSLAAAASVLQQQQQQQQQQQQQQQQQQQ 270
            :|.|              :.|.::||  ||||| .|..:.|||:.                  ..
  Fly   499 QTIA--------------TQALNSAA--AAAAG-FPYGVGAAAAA------------------AA 528

  Fly   271 HHQQLHHT------HPQSPAHSHAHHPHTHSHSQLLGSLRYTPYPLPAHLSAAAV----VVAQQQ 325
            :.|||..|      .|..||.|......|                 ||..|||||    :...|.
  Fly   529 YGQQLAATGCWYSPTPTYPASSATAAAVT-----------------PAAASAAAVQNQFLQGIQG 576

  Fly   326 HHHQQQQQQQQQQQQQQV-VAAQQQHQQQQSLAQVVAAAAGAAPGLLP-----LANP------AP 378
            :|..|....||......| :.|..|...|..::.....|.|.|...:|     :|.|      :|
  Fly   577 YHFGQYGGYQQGYMGMGVQIPATWQGVTQAQISPAQQLATGVAGTAIPQAAGVVAYPIQQFQVSP 641

  Fly   379 PATPSLLQ 386
            ...|.|||
  Fly   642 QVYPLLLQ 649

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp6	NP_001097631.1	RRM1_MSI	30..105	CDD:409990	22/73 (30%)
		RRM2_MSI	119..192	CDD:240769	24/76 (32%)
trv	NP_001163754.3	RRM2_TIA1_like	313..387	CDD:409789	22/73 (30%)
		RRM3_TIA1_like	416..489	CDD:409790	24/80 (30%)