Protein Alignment Rbp6 and Syp

DIOPT Version :10

• Sequence 1: NP_001097631.1
• Gene: Rbp6 / 39919
• FlyBaseID: FBgn0260943
• Length: 499
• Species: Drosophila melanogaster
• Sequence 2: NP_001262777.1
• Gene: Syp / 42460
• FlyBaseID: FBgn0038826
• Length: 761
• Species: Drosophila melanogaster
• Alignment Length: 560
• Identity: 109/560 - (19%)
• Similarity: 181/560 - (32%)
• Gaps: 198/560 - (35%)

  Fly    24 VPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPN-SVDKVL 87
            ||.:..::|.|.:......:.|...|...|.|.:..:|.||.|..:||:.||||::.. :|:.|.
  Fly   201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVR 265

  Fly    88 TQGTHEL-DGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMF 151
            .....|: .|||:...::|          ...::|||.:......:::...|.:..|....::::
  Fly   266 QLNDFEIRTGKKIGVTISF----------NNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 320

  Fly   152 ----DKQTNRHRGFGFVTFQSEDVVD-----------KV--CEIHFHEINNKMVECKKAQPKE-- 197
                ||:.|  |||.|:.::|.....           ||  |:|        :|:.  |.|:|
  Fly   321 SSPDDKKKN--RGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI--------IVDW--ADPQEEP 373

  Fly   198 ---------VMLPANLAKTRAAGR-----SAYG------ELVVWGSSHAHSTAATSAAAAGL--- 239
                     |:...||.:..:..:     ..||      ::..:...|.....:...|..||
  Fly   374 DEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNGK 438

  Fly   240 ------LPSSLAAAASVLQQQQQQQQQQQQQQQQQQQ------------HHQQLHHTHPQ----S 282
                  :..|||...|..:::::..:.::::..|..|            .::.|..|||.    :
  Fly   439 EIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPGIVGFETLSPYRNLSPTHPSIMSLT 503

  Fly   283 PAHSHAHHP---------------------------------HTHSHSQLLGSLRYTPYP----- 309
            |....|..|                                 :...:..:.|...|..||
  Fly   504 PMRPGARMPLRTPIPREYDYFYDFFGFSDYRQGGSFGNNVSYYDDMYRWIDGDYNYYDYPNGGGG 568

  Fly   310 --------------LPAHLSAAAVVVAQQQHHHQQQQQQQQQQQQQQVVAAQQQHQQQQSLAQVV 360
                          ||  |||..                                .|...:|...
  Fly   569 GSGGGGGSVSGGTVLP--LSAGG--------------------------------SQNSPMASGQ 599

  Fly   361 AAAAGAAPGLLPLANPAPPATPSLLQFAAGQSNAALANSLYADAAAVVGYKRLLAAAAVSSGLRA 425
            .:|.|:|.|        |.|:|||:....|       :.:......|||.:..:      |.|.|
  Fly   600 RSARGSASG--------PSASPSLMGVGRG-------HGITVPRGRVVGQRGSI------SRLGA 643

  Fly   426 PTTALGALQAAAANVPAAAAAAQLQQAQLRQNAALAAAHY 465
            .|....|..||||...|||.|   |:....|.|..|...:
  Fly   644 QTVPQAAGAAAAAGQAAAAVA---QRGATGQGAPAATGGF 680

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp6	NP_001097631.1	RRM1_MSI	30..105	CDD:409990	22/76 (29%)
		RRM2_MSI	119..192	CDD:240769	18/89 (20%)
Syp	NP_001262777.1	NURR_Syncrip-like	68..150	CDD:410953
		hnRNP-R-Q	153..>563	CDD:273732	70/383 (18%)