Protein Alignment Rbp6 and sqd

DIOPT Version :9

• Sequence 1: NP_001097631.1
• Gene: Rbp6 / 39919
• FlyBaseID: FBgn0260943
• Length: 499
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 200
• Identity: 82/200 - (41%)
• Similarity: 115/200 - (57%)
• Gaps: 22/200 - (11%)

  Fly    26 NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQG 90
            :|..|:|:|||||:|:.:.|||:||:||:|....|..||.|.|||||.|:.|::..::|||....
  Fly    53 DDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117

  Fly    91 THELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQT 155
            .|.::.||||||         |...|..|||||||:...:.|::|:||.|||.|.:..:.||||.
  Fly   118 EHIINSKKVDPK---------KAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQK 173

  Fly   156 NRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPAN--LAKTRA-------AG 211
            ::.:||.|:||.||.||..:.:....:|..|.|:.|:|.||    |.|  :...|.       .|
  Fly   174 SQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK----PENQMMGGMRGGPRGGMRGG 234

  Fly   212 RSAYG 216
            |..||
  Fly   235 RGGYG 239

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp6	NP_001097631.1	RRM1_MSI	31..105	CDD:241020	36/73 (49%)
		RRM2_MSI	119..192	CDD:240769	31/72 (43%)
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	34/70 (49%)
		RRM2_hnRNPD_like	137..211	CDD:240775	32/73 (44%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463987
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4205
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	114	1.000	Inparanoid score	I1542
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.790