DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and Msi2

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001417161.1 Gene:Msi2 / 360596 RGDID:1560397 Length:354 Species:Rattus norvegicus


Alignment Length:305 Identity:171/305 - (56%)
Similarity:197/305 - (64%) Gaps:53/305 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVD 84
            |.::..:||||||||||||||||:||||||.::|:|.|.|||:||||:||||||||||:||.|||
  Rat    12 SANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76

  Fly    85 KVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAML 149
            |||.|..||||.|.:||||||||||.|||||||||||||||||.|.:||||.||||||.:|||||
  Rat    77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141

  Fly   150 MFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRS- 213
            ||||.||||||||||||::||||:||||||||||||||||||||||||||.|..   ||...|. 
  Rat   142 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG---TRGRARGL 203

  Fly   214 --------------AYGELV-VWGSSH---------------AHSTAATSAAAAGLLPSSLAAAA 248
                          .|...| .:|..:               .:..|:..|||.|.:.::..|||
  Rat   204 PYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPALLPYLNASFPAAAYGPVAAAAVAAA 268

  Fly   249 --SVLQQQQQQQQQQQQQQQQQQQHHQQLHHTHPQSPAHSHAHHP 291
              |||                 ..:..|.:...|.|||.|:...|
  Rat   269 RGSVL-----------------NSYSAQPNFGAPTSPAGSNPARP 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 57/74 (77%)
RRM2_MSI 119..192 CDD:240769 62/72 (86%)
Msi2NP_001417161.1 None

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