DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and Caper

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster


Alignment Length:91 Identity:22/91 - (24%)
Similarity:38/91 - (41%) Gaps:28/91 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLS----GEKEG-------LLQ-------- 204
            :||..:.||  ||.:..|.....:..: |||..:|::.    |.|:.       ::|        
  Fly    37 VSGFGSFGR--KDNAQDEAVERISAEL-DNSKLQEVMGISGFGRKQAKQFDINEMIQKAKQNAPK 98

  Fly   205 -LVSDKALLDDPVFRPLVEKYAADED 229
             .|.:||::|     |..|:...|:|
  Fly    99 AAVDEKAIID-----PDDERKGKDDD 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990
RRM2_MSI 119..192 CDD:240769 10/32 (31%)
CaperNP_609095.1 SF-CC1 213..578 CDD:273721
Blue background indicates that the domain is not in the aligned region.

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