DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and Secp43

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster


Alignment Length:348 Identity:74/348 - (21%)
Similarity:131/348 - (37%) Gaps:76/348 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 KMFIGGLSWQTSPESLRDYFGRYG-DISEAMVMKDPTTRRSRGFGFVTF-SDPNSVDKVLTQGTH 92
            ::::|.|....:...:...|.:.| |.:...:|::..|....|:.||.| ||.:::|.:     |
  Fly     7 QLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAM-----H 66

  Fly    93 ELDGKKV---DPKVAFPRRAHPKMV-----TRTKKIFVGGLSAPTTLED---VKSYFEQFGPIED 146
            :|:||.:   :|.|.|...:.....     .|...::||.||  :.::|   .|.:..:|..|:.
  Fly    67 KLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLS--SDVDDYQLYKVFSSKFTSIKT 129

  Fly   147 AMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEIN------NKMVECKKAQPKEVMLPANLA 205
            |.::.| .....:|:|||.|..||.....    .:::|      .|.::...|.||.   .:.|.
  Fly   130 AKVILD-SLGFSKGYGFVRFGIEDEQKSA----LYDMNGYIGLGTKPIKICNAVPKP---KSELG 186

  Fly   206 KTRAAGRSAYGELVVWGSSHAHSTAATSAAAAGLLPSSLAAAASVLQQQQQQQQQQQQQQQQQQQ 270
            .....|.:.||    :||                  ...||..:...|.........|..|..|.
  Fly   187 GAVGEGNTNYG----YGS------------------GMTAAGGTDYSQYYDPTSTYWQGYQAWQG 229

  Fly   271 HHQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPYPLPAHLSAAAVVVAQQQHHHQQQQQQQ 335
            :::|...:...:.|:.......:||:          |..|..|..|.:.          |:..|.
  Fly   230 YYEQAGASITDAAAYYQQAMSQSHSN----------PQTLAQHAEAWSA----------QRSAQY 274

  Fly   336 QQQQQQQVVAAQQQHQQQQSLAQ 358
            :||||||..:|....:.:..|.:
  Fly   275 EQQQQQQTASAANGAEDENGLVE 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 20/79 (25%)
RRM2_MSI 119..192 CDD:240769 19/81 (23%)
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:410022 21/87 (24%)
RRM2_SECp43_like 99..178 CDD:409781 19/85 (22%)
Trnau1ap 210..330 CDD:465438 22/108 (20%)

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