DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and rbm7

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_956219.1 Gene:rbm7 / 334784 ZFINID:ZDB-GENE-030131-6724 Length:252 Species:Danio rerio


Alignment Length:230 Identity:50/230 - (21%)
Similarity:72/230 - (31%) Gaps:70/230 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV------C 176
            :.:|||.|....|.|.:...|.|.||:....:..:.: .:.:.|.||.|:.|..|...      .
Zfish     9 RTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNE-GKSKLFAFVNFKHEVSVPYALNLLNGI 72

  Fly   177 EIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYGELVVWGSSHAHSTAATSAAAAGLLP 241
            .:|..::|.|.........:|...|||                    |...|.|.|.....|..|
Zfish    73 RLHGRQLNIKFKTGSSHINQEGKSPAN--------------------SQNPSPANTPGHRGGRTP 117

  Fly   242 SSLA--------------AAASVLQQQ-------QQQQQQQQ------QQQQQQQQ--------- 270
            ..:.              ::...||:|       |.|.||.|      ||..||.:         
Zfish   118 EQMGSPSYSPPQHMQRPFSSPDTLQRQAMMNNMWQVQMQQLQMLSGTFQQGMQQPRGNADGGWSG 182

  Fly   271 HHQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRY 305
            |..|.|     ||..::.|......|..  |:..|
Zfish   183 HRGQRH-----SPQDNNNHQGRDQRHGN--GANNY 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990
RRM2_MSI 119..192 CDD:240769 19/78 (24%)
rbm7NP_956219.1 RRM_RBM7 8..82 CDD:410005 18/73 (25%)
PABP-1234 <11..195 CDD:130689 46/209 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 88..137 10/68 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 171..252 10/47 (21%)
PRK12678 <171..>248 CDD:237171 10/47 (21%)
Blue background indicates that the domain is not in the aligned region.

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