DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp6 and hnrnpa0b

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_999871.1 Gene:hnrnpa0b / 334222 ZFINID:ZDB-GENE-030131-6154 Length:314 Species:Danio rerio


Alignment Length:196 Identity:76/196 - (38%)
Similarity:112/196 - (57%) Gaps:9/196 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHEL 94
            |:|:|||:.||:.:.||.||.::|::::.:|:::...:|||.|||||:|.....|..:....|.:
Zfish     9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAARPHVV 73

  Fly    95 DGKKVDPKVAFPRR--AHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNR 157
            |||.|:.|.|..|.  ..|:.:.:.||||||||......:|:..:|.|||.||.:.::.||.|.:
Zfish    74 DGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGK 138

  Fly   158 HRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAK-------TRAAGRSAY 215
            .||||||.|:..|..||...:.||.||...||.|||..|:.:..|..|:       .|..||:..
Zfish   139 KRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEIQAAGGARGGRGRGGGRGMGRNQN 203

  Fly   216 G 216
            |
Zfish   204 G 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 29/74 (39%)
RRM2_MSI 119..192 CDD:240769 33/72 (46%)
hnrnpa0bNP_999871.1 RRM_SF 6..84 CDD:473069 29/74 (39%)
RRM_SF 100..179 CDD:473069 37/78 (47%)
HnRNPA1 263..294 CDD:463312
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.