DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and tardbpb

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_958884.1 Gene:tardbpb / 325052 ZFINID:ZDB-GENE-030131-3777 Length:412 Species:Danio rerio


Alignment Length:261 Identity:72/261 - (27%)
Similarity:120/261 - (45%) Gaps:17/261 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ELGPCSPSEVPNDPGK---MFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVT 76
            |:...|.:::.....|   :.:.||.|:||.:.|:||||.:|::....|.:|..|..|:|||||.
Zfish    93 EIDASSATKIKRGDQKTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVR 157

  Fly    77 FSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQF 141
            |.|..:..||:|| .|.:||:..|.|:...::...:.: |::|:|||..:...|.::::.:|.|:
Zfish   158 FGDWETQSKVMTQ-RHMIDGRWCDCKLPNSKQGIDEPM-RSRKVFVGRCTEDMTADELRQFFMQY 220

  Fly   142 GPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAK 206
            |.:.|..:     ....|.|.||||..:.|...:|.... .|....|....|:||.......:.:
Zfish   221 GEVTDVFI-----PKPFRAFAFVTFADDQVAAALCGEDL-IIKGVSVHISNAEPKHNNTRQMMER 279

  Fly   207 TRAAGRSAYGELVVWGSSHAHSTAATSAAAAG------LLPSSLAAAASVLQQQQQQQQQQQQQQ 265
            ....|....|:......|:.......|:::.|      |.|:.:|||.:.||..........||.
Zfish   280 AGRFGNGFGGQGFAGSRSNMGGGGGGSSSSLGNFGNFNLNPAMMAAAQAALQSSWGMMGMLAQQN 344

  Fly   266 Q 266
            |
Zfish   345 Q 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 32/77 (42%)
RRM2_MSI 119..192 CDD:240769 19/72 (26%)
tardbpbNP_958884.1 TDP43_N 5..78 CDD:465833
RRM1_TDP43 111..184 CDD:409760 31/73 (42%)
RRM2_TDP43 197..267 CDD:409761 19/75 (25%)
Blue background indicates that the domain is not in the aligned region.

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