DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp6 and Hnrnpa1

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001386203.1 Gene:Hnrnpa1 / 29578 RGDID:69234 Length:373 Species:Rattus norvegicus


Alignment Length:202 Identity:82/202 - (40%)
Similarity:121/202 - (59%) Gaps:5/202 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SPSEVPNDP---GKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPN 81
            |.||.|.:|   .|:||||||::|:.||||.:|.::|.:::.:||:||.|:|||||||||::...
  Rat     2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66

  Fly    82 SVDKVLTQGTHELDGKKVDPKVAFPRR--AHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPI 144
            .||..:....|::||:.|:||.|..|.  ..|......|||||||:...|....::.||||:|.|
  Rat    67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131

  Fly   145 EDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRA 209
            |...:|.|:.:.:.|||.||||...|.|||:....:|.:|....|.:||..|:.|..|:.::...
  Rat   132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGR 196

  Fly   210 AGRSAYG 216
            :|...:|
  Rat   197 SGSGNFG 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 36/74 (49%)
RRM2_MSI 119..192 CDD:240769 30/72 (42%)
Hnrnpa1NP_001386203.1 RRM1_hnRNPA1 12..92 CDD:410154 37/79 (47%)
RRM2_hnRNPA3 105..184 CDD:409996 33/78 (42%)
HnRNPA1 313..345 CDD:463312
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.