DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and Msi1

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_683688.1 Gene:Msi1 / 259272 RGDID:628778 Length:362 Species:Rattus norvegicus


Alignment Length:424 Identity:185/424 - (43%)
Similarity:224/424 - (52%) Gaps:96/424 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPN 81
            |..|| :.|:||.|||||||||||:.|.||:|||::|::.|.:||:||.|:||||||||||.|..
  Rat     9 GLASP-DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72

  Fly    82 SVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIED 146
            .|||||.|..||||.|.:||||||||||.||||||||||||||||..||:||||.||||||.::|
  Rat    73 GVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137

  Fly   147 AMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAA- 210
            |||||||.||||||||||||:|||:|:||||||||||||||||||||||||||.|...|:.|:. 
  Rat   138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRV 202

  Fly   211 ---GRSAY----GELVVWGSSHAHSTAATSAAAAGLLPSSLAAAASVLQQQQQQQQQQQQQQQQQ 268
               |..|:    |.|   |.....:|...|.:..||.|.                          
  Rat   203 MPYGMDAFMLGIGML---GYPGFQATTYASRSYTGLAPG-------------------------- 238

  Fly   269 QQHHQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPY-PLPAHLSAAAVVVAQQQHHHQQQQ 332
             ..:|.......::|..|....|.       |.::..|.| |:.|..:|||||            
  Rat   239 -YTYQFPEFRVERTPLPSAPVLPE-------LTAIPLTAYGPMAAAAAAAAVV------------ 283

  Fly   333 QQQQQQQQQQVVAAQQQHQQQQSLAQVVAAAAGAAPGLLPLANPAPPATPSLLQFAAGQSNAALA 397
                                         ...|:.|..:.   |.|.:|||......|.::....
  Rat   284 -----------------------------RGTGSHPWTMA---PPPGSTPSRTGGFLGTTSPGPM 316

  Fly   398 NSLYADAAAVVGYKRLLAAAAVSSGLRAPTTALG 431
            ..||..|....|....::||:     .||:|..|
  Rat   317 AELYGAANQDSGVSSYISAAS-----PAPSTGFG 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 50/74 (68%)
RRM2_MSI 119..192 CDD:240769 61/72 (85%)
Msi1NP_683688.1 RRM1_MSI 21..96 CDD:409990 50/74 (68%)
PABP-1234 <32..339 CDD:130689 164/392 (42%)
RRM2_MSI 110..183 CDD:240769 61/72 (85%)

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