DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp6 and CSTF2T

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_056050.1 Gene:CSTF2T / 23283 HGNCID:17086 Length:616 Species:Homo sapiens


Alignment Length:294 Identity:56/294 - (19%)
Similarity:106/294 - (36%) Gaps:51/294 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 PKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQ-SEDVVDK 174
            |.|....:.:|||.:....|.|.:|..|.:.|.:....|::|::|.:.:|:||..:| .|..:..
Human     9 PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73

  Fly   175 VCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSA------YGELVVWGSSHAHSTAATS 233
            :..::..|.:.:.:....|..::     |..:.::.|.:|      ||:.:    ....:..:.:
Human    74 MRNLNGREFSGRALRVDNAASEK-----NKEELKSLGPAAPIIDSPYGDPI----DPEDAPESIT 129

  Fly   234 AAAAGLLPSSLAAAASVLQQQQQQQQQQQQQQQQQQQHHQQLHHTHPQSPA-------------- 284
            .|.|.|.|..:   ..:::|.:...|...|:.:.....:.||.:...|:..              
Human   130 RAVASLPPEQM---FELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKIL 191

  Fly   285 HSHAH-HPHTHSHSQLLGSLRYTPYPLPAHLSAAAVVVAQQQHHHQQQQQQQQQQQQQQVVAAQQ 348
            |...| .|.....||.:......|.|.|.......|::                 .||...|.|.
Human   192 HRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLL-----------------NQQNPPAPQP 239

  Fly   349 QHQQQQSLAQVVAAAAGAAPGLLPLANPAPPATP 382
            ||..::.:..:.........|.:|...|.|.|.|
Human   240 QHLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVP 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990
RRM2_MSI 119..192 CDD:240769 17/73 (23%)
CSTF2TNP_056050.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 19/83 (23%)
CSTF2_hinge 112..191 CDD:433869 12/85 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..241 10/54 (19%)
PRK12323 <242..>387 CDD:481241 6/32 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 262..418 5/12 (42%)
9 X 5 AA tandem repeats of M-E-T-R-[AG] 418..462
9 X 5 AA tandem repeats of G-[AT]-G-[MI]-Q 505..549
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..573
CSTF_C 572..612 CDD:464130
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.