DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and Msi1

DIOPT Version :9

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_032655.1 Gene:Msi1 / 17690 MGIID:107376 Length:362 Species:Mus musculus


Alignment Length:424 Identity:186/424 - (43%)
Similarity:224/424 - (52%) Gaps:96/424 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPN 81
            |..|| :.|:||.|||||||||||:.|.||:|||::|::.|.:||:||.|:||||||||||.|..
Mouse     9 GLASP-DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 72

  Fly    82 SVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIED 146
            .|||||.|..||||.|.:||||||||||.||||||||||||||||..||:||||.||||||.::|
Mouse    73 GVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137

  Fly   147 AMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAA- 210
            |||||||.||||||||||||:|||:|:||||||||||||||||||||||||||.|...|:.|:. 
Mouse   138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRV 202

  Fly   211 ---GRSAY----GELVVWGSSHAHSTAATSAAAAGLLPSSLAAAASVLQQQQQQQQQQQQQQQQQ 268
               |..|:    |.|   |.....:|...|.:..||.|.                          
Mouse   203 MPYGMDAFMLGIGML---GYPGFQATTYASRSYTGLAPG-------------------------- 238

  Fly   269 QQHHQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPY-PLPAHLSAAAVVVAQQQHHHQQQQ 332
             ..:|.......:||..|....|.       |.::..|.| |:.|..:|||||            
Mouse   239 -YTYQFPEFRVERSPLPSAPVLPE-------LTAIPLTAYGPMAAAAAAAAVV------------ 283

  Fly   333 QQQQQQQQQQVVAAQQQHQQQQSLAQVVAAAAGAAPGLLPLANPAPPATPSLLQFAAGQSNAALA 397
                                         ...|:.|..:.   |.|.:|||......|.::....
Mouse   284 -----------------------------RGTGSHPWTMA---PPPGSTPSRTGGFLGTTSPGPM 316

  Fly   398 NSLYADAAAVVGYKRLLAAAAVSSGLRAPTTALG 431
            ..||..|....|....::||:     .||:|..|
Mouse   317 AELYGAANQDSGVSSYISAAS-----PAPSTGFG 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 31..105 CDD:241020 49/73 (67%)
RRM2_MSI 119..192 CDD:240769 61/72 (85%)
Msi1NP_032655.1 RRM1_MSI 22..96 CDD:241020 49/73 (67%)
PABP-1234 <32..312 CDD:130689 159/360 (44%)
RRM2_MSI 110..183 CDD:240769 61/72 (85%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 124 1.000 Domainoid score I5498
eggNOG 1 0.900 - - E1_KOG4205
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 367 1.000 Inparanoid score I2137
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1565323at2759
OrthoFinder 1 1.000 - - FOG0000417
OrthoInspector 1 1.000 - - otm44313
orthoMCL 1 0.900 - - OOG6_101082
Panther 1 1.100 - - O PTHR48032
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1869
SonicParanoid 1 1.000 - - X310
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.860

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