DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and rbm-28

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_497077.2 Gene:rbm-28 / 175145 WormBaseID:WBGene00011043 Length:608 Species:Caenorhabditis elegans


Alignment Length:250 Identity:52/250 - (20%)
Similarity:94/250 - (37%) Gaps:58/250 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 PSEVPNDP------------GK-MFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGF 72
            |::.|.:|            || :|:..||:.|..|.:::...::|.|..|::.|...:..|:|.
 Worm   242 PAKKPKNPKAQLKTDESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGT 306

  Fly    73 GFVTFSDPNSVDKVLTQGTHE---LDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDV 134
            .||.||.|......: :|..:   :|.:.|...:|.||:....|  ..:|:    ...|....::
 Worm   307 AFVHFSTPIEASNCI-EGVEDGVIIDNRLVKANLAIPRKEAADM--EKEKL----TKVPKDKRNL 364

  Fly   135 KSYFEQFGPIED-------------------AMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHF 180
            :  ..:||.|.|                   |..|..|..|.:.....|.....::..|:.::..
 Worm   365 R--LARFGLIRDGTAAAAGMSKDDAAKRERIAEAMRKKLENTNMFISPVRLCIHNLPQKINDVKL 427

  Fly   181 HEINNK-------MVECKKAQPKEVMLPANLAKTRAAGRSAYGELVVWGSSHAHS 228
            .|:..|       :.||:....|:.:.|....|:...|..|:.|       |.|:
 Worm   428 KELAQKFTSPGALITECRVWMDKKRLTPDGKPKSSGFGFVAFKE-------HMHA 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 20/78 (26%)
RRM2_MSI 119..192 CDD:240769 16/98 (16%)
rbm-28NP_497077.2 RRM2_RBM28_like 96..173 CDD:409848
RRM3_RBM28_like 263..340 CDD:409849 20/77 (26%)
RRM4_RBM28_like 411..503 CDD:409850 14/71 (20%)
Blue background indicates that the domain is not in the aligned region.

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