DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and msi2a

DIOPT Version :9

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_009303812.1 Gene:msi2a / 100002680 ZFINID:ZDB-GENE-030826-25 Length:407 Species:Danio rerio


Alignment Length:444 Identity:193/444 - (43%)
Similarity:241/444 - (54%) Gaps:79/444 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 QVELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTF 77
            ||..|..:.|:  :||||||||||||||||:||||||.::|:|.|.|||:||||:|||||||:||
Zfish     7 QVTSGSLNDSQ--HDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITF 69

  Fly    78 SDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFG 142
            :|.:||||||.|..||||.|.:||||||||||.|||||||||||||||||.|.:||||.||||||
Zfish    70 ADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFG 134

  Fly   143 PIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKT 207
            .:|||||||||.||||||||||||::||:|:||||||||||||||||||||||||||.|..   |
Zfish   135 KVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG---T 196

  Fly   208 RAAGRS---------------AYGELVV--------WGSSHAHSTAATSAAAAGLLPSSLAAAAS 249
            |...||               :|..:|.        :..|:::......|.|.|.:.::..||| 
Zfish   197 RGRARSLPYTMDAFMLGMGMLSYPNIVATYGRGYTGFSPSYSYQFPGFPATAYGPVAAAAVAAA- 260

  Fly   250 VLQQQQQQQQQQQQQQQQQQQHHQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPYPLPAHL 314
                          :...:....:..:..:||:...               |...|..|..|...
Zfish   261 --------------RGSGRATRGRSGYMAYPQNAGP---------------GFPDYGFYSGPGDQ 296

  Fly   315 SAAAVVVAQQQHHHQQQQQQQQQQQQQQVVAAQQQHQQQQSLAQVVAAAAGA---APGLLPLAN- 375
            .||....|..........|..|.:.......:..||.......:    ::||   .||..|.|| 
Zfish   297 RAAPCSFADYATLGPHTGQMLQSEHVTSTCNSPSQHHPSPDHFK----SSGANPPRPGGFPGANS 357

  Fly   376 PAPPATPSLLQFAAGQSNAALANSLYADAAAV---VGYKRLLA----AAAVSSG 422
            |.|.|.    .:.....::|:.|  |..||:.   .|:...:|    |.|.::|
Zfish   358 PGPVAD----LYGPSSQDSAVGN--YISAASPQPGSGFNHSIAGPLIATAFTNG 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 31..105 CDD:241020 54/73 (74%)
RRM2_MSI 119..192 CDD:240769 61/72 (85%)
msi2aXP_009303812.1 RRM <2..162 CDD:223796 117/156 (75%)
RRM1_MSI 23..97 CDD:241020 54/73 (74%)
RRM2_MSI 111..184 CDD:240769 61/72 (85%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579360
Domainoid 1 1.000 124 1.000 Domainoid score I5451
eggNOG 1 0.900 - - E1_KOG4205
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H62199
Inparanoid 1 1.050 349 1.000 Inparanoid score I2258
OMA 1 1.010 - - QHG47546
OrthoDB 1 1.010 - - D1565323at2759
OrthoFinder 1 1.000 - - FOG0000417
OrthoInspector 1 1.000 - - otm24773
orthoMCL 1 0.900 - - OOG6_101082
Panther 1 1.100 - - O PTHR48032
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X310
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.810

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