DRSC/TRiP Functional Genomics Resources

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Protein Alignment TpnC73F and Phf24

DIOPT Version :9

Sequence 1:NP_001287091.1 Gene:TpnC73F / 39916 FlyBaseID:FBgn0010424 Length:155 Species:Drosophila melanogaster
Sequence 2:XP_006238183.1 Gene:Phf24 / 500446 RGDID:1559864 Length:400 Species:Rattus norvegicus


Alignment Length:150 Identity:30/150 - (20%)
Similarity:56/150 - (37%) Gaps:54/150 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 TPEQIAVLQKAFNSFDH--------QKTGSIPTEMVADILRLMGQPFDKKILEELIEEVDEDKSG 65
            |.||:..:..|.::|..        ::.|.:|...             :..:|..:::|.|:|. 
  Rat    10 TVEQVQKVSLAVSAFKDGLRDRPSVRRGGELPGSR-------------RGTVEGSVQQVQEEKE- 60

  Fly    66 RLEFGEFVQLAAKFIVEEDAEAMQKEL---REAF-RLYDKQG---------NGFIPTTCLKEILK 117
                           .|..|..:|:|.   |.|: ||.|.:|         :.|.|...::. .:
  Rat    61 ---------------AEASAPGVQEESSSNRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRP-TR 109

  Fly   118 ELDDQLTEQELDIMIEEIDS 137
            :|||   ::..||.:|..:|
  Rat   110 KLDD---DKPPDICLEPRES 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpnC73FNP_001287091.1 PTZ00184 6..153 CDD:185504 29/149 (19%)
Phf24XP_006238183.1 Zf_RING 127..198 CDD:407013 29/149 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342440
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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