DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fit2 and fermt2

DIOPT Version :10

Sequence 1:NP_648947.1 Gene:Fit2 / 39907 FlyBaseID:FBgn0036688 Length:715 Species:Drosophila melanogaster
Sequence 2:XP_005158972.1 Gene:fermt2 / 553051 ZFINID:ZDB-GENE-050506-132 Length:695 Species:Danio rerio


Alignment Length:733 Identity:316/733 - (43%)
Similarity:474/733 - (64%) Gaps:77/733 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ENSWNLRIFITDLALEKTMRVRGDQHIGGIMLQLVDP-ENPKDWSDHALWWPARNVWLSRTKLTL 69
            :.:|.|::.:|||..:.::||.|:.||||:||:||:. :..||||||||||..:..||.:|..||
Zfish    15 DGTWELKMHVTDLNRDVSLRVTGEIHIGGVMLKLVEKLDVKKDWSDHALWWEKKKTWLLKTHWTL 79

  Fly    70 DQCGVQADSLLHFTPMHKILRVQLPDLRYLDSRVDYSVKTFSAVVNLCKQLDIRYPEELSLC-KP 133
            |:.|:|||:.|.|||.||:||:|||:::::..:|::|.:.|.||.::||..:||:||||||. ||
Zfish    80 DKYGIQADARLLFTPQHKLLRLQLPNMKHMRVKVNFSDRVFKAVSDICKTFNIRHPEELSLLRKP 144

  Fly   134 LEAEHLKRNFAQVPHQK---RVPIAEPDGTTYLQPAADTNSFVPISTSFHGEGGSTGSLDKPSAP 195
            .:.:..|:.......:.   ..|:..|..      |:|.....|:..|.:            |:|
Zfish   145 RDPKKKKKKLEDAEEETLELEGPLLTPGS------ASDVLYIGPVKGSIY------------SSP 191

  Fly   196 GSFFCAPLSPHNHRARSPVRTVSPFPGTWKQSQLGYATYDSSSSSLGDFQENLASSPPTPCADVR 260
            |.:.......::.|..||:...|    .|    .|.:.....:.|:      ||.|.|....|:.
Zfish   192 GLYSKTMTPTYDSRDGSPLSPTS----AW----FGDSPLSEGNPSI------LAVSQPITSPDIL 242

  Fly   261 ALQLRPKSLVEKARLNVGWLDSSLSIMEQGIREYDTLCLRFKYFTFFDLNPKCDQVRINQLYEQA 325
            ....:|:||::||::|.||||||.|:|||.::|.:.|.|||||.:|||||||.|.:|:|||||||
Zfish   243 VKMYKPQSLLDKAKINQGWLDSSRSLMEQDVKENEVLLLRFKYHSFFDLNPKYDAIRVNQLYEQA 307

  Fly   326 KWSVLNEELDCTEEESLMFAALQFQVNHHVDHTPQGAAVDSGIETSSQENDNE---DEIDSALKE 387
            ||::|.||::|||||.:||||||:.:|..           |.:.:.:..|::|   ||:|:||.:
Zfish   308 KWAILLEEIECTEEEMMMFAALQYHINKL-----------SIMSSDNHMNNSEKEVDEVDAALSD 361

  Fly   388 LQITLEGPDYGGDSRNITRIPELSDYLRYLKPQRFTLRGYKRYYFTYRDLHLHLFKNAEDSRRVA 452
            |:|||||........:||.||||:||::..||::.||:|||:|:.|::|:.:..:|:.|::.. .
Zfish   362 LEITLEGGKTSNTLGDITSIPELADYVKVFKPKKLTLKGYKQYWCTFKDITISCYKSREEAHG-T 425

  Fly   453 PAISINLKGCEVTPDVNLSQGKYAIRLEVSPDGGHGINSEVWVRCENEQQYAKWMAACRLAAKGR 517
            ||..:||:|||||||||:|..|:.|:|.:..  ..|:| |:|:||:.|:|||:||||||||:||:
Zfish   426 PAHQMNLRGCEVTPDVNISGQKFNIKLLIPV--ADGMN-EIWLRCDTEKQYAQWMAACRLASKGK 487

  Fly   518 SLADSSYESEVDSILSLLQMQRPAHGVHVNIDPRSVEAVD-------YLSPKIIRKLSNK----- 570
            ::|||||..||.:|||.|:||      |:|.||:.:|.:.       .:||:.::|..||     
Zfish   488 TMADSSYNLEVQNILSFLKMQ------HMNPDPQIIEPITTDINPECLVSPRYLKKYKNKQPGFV 546

  Fly   571 ---AVQRILEAHANVRELNALDSKLKYIQAWRSLPDFGVSLFIIKFDGHRKEELLGVAHNRIMRM 632
               ...||||||.||.:::.:::|:::||||:|||:||::.|:.||.|.:|:||:|:.:||::||
Zfish   547 RDLISARILEAHQNVAQMSLIEAKMRFIQAWQSLPEFGITHFLAKFQGGKKDELIGITYNRLIRM 611

  Fly   633 DLSSGDHIKTWRYNTMKAWNVNWNIKCMMIQFEDE-NVVFSCHSADCKVVHEFIGGYIFMSMRSK 696
            |..:||.|||||::.||.|||||.||.:.::|.|| ::.|.|...||||||||||||||:|.|:|
Zfish   612 DAGTGDAIKTWRFSNMKQWNVNWEIKMVTVEFADEPSLAFICAEVDCKVVHEFIGGYIFLSTRAK 676

  Fly   697 DTNQTLNEELFHKLTGGW 714
            |.|::|:||:|:|||.||
Zfish   677 DQNESLDEEMFYKLTSGW 694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fit2NP_648947.1 FERM_F0_kindlins 8..86 CDD:340615 40/78 (51%)
FERM_F1_kindlins 87..304 CDD:340616 67/220 (30%)
B41 259..>351 CDD:214604 55/91 (60%)
PH_fermitin 408..536 CDD:269943 64/127 (50%)
FERM_M <507..609 CDD:459788 50/116 (43%)
FERM_C_fermitin 603..693 CDD:270026 50/90 (56%)
fermt2XP_005158972.1 FERM_F0_KIND2 17..96 CDD:340701 40/78 (51%)
FERM_F1_KIND2 97..286 CDD:340704 67/220 (30%)
B41 <253..>333 CDD:214604 52/79 (66%)
PH_fermitin 382..506 CDD:269943 64/127 (50%)
FERM_M <464..588 CDD:459788 58/129 (45%)
PH-like 582..673 CDD:473070 50/90 (56%)

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