DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fit2 and ptpn4b

DIOPT Version :9

Sequence 1:NP_648947.1 Gene:Fit2 / 39907 FlyBaseID:FBgn0036688 Length:715 Species:Drosophila melanogaster
Sequence 2:XP_005174003.1 Gene:ptpn4b / 407634 ZFINID:ZDB-GENE-030131-6259 Length:935 Species:Danio rerio


Alignment Length:763 Identity:139/763 - (18%)
Similarity:240/763 - (31%) Gaps:306/763 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 NLRIFITDLALEKTMRVRGD----QHIGGIMLQL-VDPENPKDW--------SDHALWWPARNV- 60
            |..:.:...|::..:   ||    :|:.|.:.:. ..|..|:|:        .:|....||::. 
Zfish   144 NTAVLLASYAVQAEL---GDYSHSEHLSGYLSEYSFIPNPPQDFEKEVAKLHQEHNGLTPAQSEF 205

  Fly    61 -WLSRTKLTLDQCGVQADSLLHFT-----------------------------PMHKILRVQLPD 95
             :|:..: ||:..||:    ||:.                             |..||:::....
Zfish   206 NYLNAAR-TLELYGVE----LHYARDHCNTEIYVGVLSAGISVYKDRVRVNHFPWFKIVKISFKS 265

  Fly    96 LRYL-----------DSRVDYSVKTFSAVVNLCK---------QLDIRYPEELSL---------- 130
            .::.           :|.:.:::..:.|..||.|         :|:...|.|.:|          
Zfish   266 KQFFIQLRKELTECRESLLGFNMMNYRACKNLWKSCVENHTFFRLERPVPPERNLFLHYFTLGSK 330

  Fly   131 ---CKPLEAEHLK---------RNFAQVPHQKRVP--IAEPDGTTY---------LQPAADTNSF 172
               |...||:.::         |.||:.|.:..|.  ::..|..|.         |:..:..|..
Zfish   331 FRYCGRTEAQSVQYGKERGNKNRVFARSPSKPLVRRLMSGLDWETVSRNSLSDDRLETQSLPNRS 395

  Fly   173 VPISTSFHGEGGST-GSLDKPSAPGSFF--------CAPLSPHNHRARSPVR--------TVSPF 220
            .|.|........:| |:..:||:.|...        |...:  ||::.|..:        |.||.
Zfish   396 PPDSPDHSNSVFTTEGARIRPSSIGHLVDHVIDDSPCQTFT--NHKSASSTQANSISLDSTPSPD 458

  Fly   221 -----------PGTWKQSQLGYATYDSSSSSLGDFQENLASSPPTPCADVRA------------L 262
                       |..:::..|.:.....|...|.| .::|:.....|.|..::            :
Zfish   459 VTTDEQPPALPPKQFRKDPLNHNGRSQSQHELDD-HDHLSELYNVPAASGKSMNGAVPHDNLVLI 522

  Fly   263 QLRPKSLVEKAR--LNV-GWLDSSLSIMEQGI-------------REYDTLCL----RFKYFTFF 307
            ::||.   |..|  .|| |.:|..:.|:...:             .|.|.:.|    .....|..
Zfish   523 KMRPD---ENGRFGFNVKGGVDQRMPIIVSRVAPGTPADMCVPRLNEGDQVVLINGRDISDHTHD 584

  Fly   308 D----LNPKCDQ--------VRINQLYEQAKWSVLNEELDCTEEESLMFAALQFQVNHHVDHTPQ 360
            |    :...|:.        ||.|.:|            |..||:..:.....||      :.|:
Zfish   585 DVVMIIKASCEDQSGELILLVRPNAIY------------DVDEEQEKLDLEPDFQ------YIPE 631

  Fly   361 GAAVDSGIETSSQENDNEDEIDSALKELQITLEGPDYG--------------GDSRNITRIPELS 411
            ..    |:|:.|       |.||....:|:..:|...|              |.|.:..|:|:..
Zfish   632 AC----GLESHS-------EADSLRSSIQLLRDGLASGTVPAQFDQLYRKRPGMSMSCARLPQNV 685

  Fly   412 DYLRYLKPQRFTLRGYKRYYFTYRDLHLHLFKNAEDSRRVAPAISINLKGCEVTPDVNL------ 470
            ...|                  |||:      :..||.||.      |||.|...:.|.      
Zfish   686 SKNR------------------YRDI------SPYDSTRVV------LKGTEDYINANFINMDVP 720

  Fly   471 SQGKYAIRLEVSPDGG-HGINSEVW----------------------VRCEN-------EQQYAK 505
            |:|:  :|..::..|. .|..|:.|                      |:|..       ...|..
Zfish   721 SKGE--VRRYIACQGPLPGTCSDFWQMVWEQSAALVVMLTTQVERGRVKCHQYWPNVSASGTYGG 783

  Fly   506 WMAACRLAAKG------RSLADSSYESEVDSILSLLQMQR---PAHGV 544
            :...| ::.:|      |.|..:..||:.:.  .:.|||.   |.|||
Zfish   784 FQVTC-VSEEGNSAYLLRDLTLTHLESKEER--QICQMQYLAWPDHGV 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fit2NP_648947.1 B41 259..>351 CDD:214604 23/135 (17%)
FERM_M 310..>365 CDD:278785 11/62 (18%)
PH_fermitin 408..536 CDD:269943 30/169 (18%)
PH 408..515 CDD:278594 25/142 (18%)
FERM_M <557..609 CDD:278785
FERM_C_fermitin 603..693 CDD:270026
ptpn4bXP_005174003.1 B41 30..222 CDD:214604 17/85 (20%)
FERM_N 33..97 CDD:286467
FERM_B-lobe 122..214 CDD:271216 13/73 (18%)
FERM_C_PTPN4_PTPN3_like 216..310 CDD:270010 12/97 (12%)
FA 325..365 CDD:285894 7/39 (18%)
PDZ_signaling 519..606 CDD:238492 15/89 (17%)
PTPc 662..915 CDD:214550 40/202 (20%)
PTPc 687..914 CDD:238006 36/177 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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