DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fit2 and tln-1

DIOPT Version :9

Sequence 1:NP_648947.1 Gene:Fit2 / 39907 FlyBaseID:FBgn0036688 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_490886.2 Gene:tln-1 / 171736 WormBaseID:WBGene00006771 Length:2553 Species:Caenorhabditis elegans


Alignment Length:667 Identity:113/667 - (16%)
Similarity:198/667 - (29%) Gaps:288/667 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 PARNVWLSRTKLTLDQCGVQADSLLHFTPMHKILRVQLPDLRYLDSRVDYSVKTFSAVVNLCKQL 120
            |::::|:...: |.:...|:....:.:....::|:|::.|.......||.|......::.:|.::
 Worm    57 PSKSLWMDNGR-TFEHYLVRNKDEIEYKRKIRLLKVRMLDGAVKTISVDESQPVSQLMMTVCNKI 120

  Fly   121 DIRYPEELSLCKPLEAEHLKRNFAQVPHQKRVPIAEPDGTTYLQPAADTNSFVPISTSFHGEGGS 185
            .|...||.||.:.   :.|.:|                                      |.||.
 Worm   121 GISNYEEYSLVRD---DILMQN--------------------------------------GGGGG 144

  Fly   186 TGSLDKPSAPGSFFCAPLSPHNHRARSPVRTVSPFPGTWKQSQLGYATYDSSSSSLGDFQENLAS 250
            .|......:..:     |.....|::|..|......||.::         .:...|.:.::.|.:
 Worm   145 GGGGQNGGSTWN-----LKEKESRSKSSDRGGGGIYGTMRK---------KNEQKLEELRKKLHT 195

  Fly   251 SPPTPCADVRALQLRPKSLVEKARLNVGWLDSSLSIMEQGIREYDTLCLRFKYFTFFDLN-PKCD 314
            ....|                       |||.:.::.||||.|.:||.||.||| |.|.| ...|
 Worm   196 DEELP-----------------------WLDHTKTLREQGITEEETLILRRKYF-FSDSNVDSRD 236

  Fly   315 QVRINQLYEQAKWSVLNEELDCTEEESLMFAALQFQVNHHVDHTPQGAAVDSGIETSSQENDNED 379
            .|::|.||.|.:..:|.......:|.:...||||..:.:                          
 Worm   237 PVQLNLLYVQCRDGILRGLHPVEKETAFQLAALQSHIQY-------------------------- 275

  Fly   380 EIDSALKELQITLEGPDYGGDSRNITRIPELSDYLRYLKPQRFTLRGYKRYYFTYRDLHLHLFKN 444
                               ||                               |.|.....||   
 Worm   276 -------------------GD-------------------------------FPYDKPKFHL--- 287

  Fly   445 AEDSRRVAPAISINLKGCEVTPDVNLSQGKYAIRLEVSPDGGHGINSEVWVRCENEQQYAKWMAA 509
              |.|.|.|                                               ::|||    
 Worm   288 --DGRDVLP-----------------------------------------------KEYAK---- 299

  Fly   510 CRLAAKGRSLADSSYESEVDSILSLLQMQRPAHGVHVNIDPRSVEAVDYLSPKIIRKLSNKAVQR 574
                         :.|:|                                             ::
 Worm   300 -------------NKENE---------------------------------------------KK 306

  Fly   575 ILEAHANVRELNALDSKLKYIQAWRSLPDFGVSLFII--KFDGHRK--EELLGVAHNRIMRMDLS 635
            ::..:..:...:.||:|.||:...|.|..:||:.|::  |..|..|  ..||||....:||:|.:
 Worm   307 VVAMYKELSGTSELDAKSKYVHLCRGLKTYGVTFFVVKEKLPGKNKLVPRLLGVNKESVMRVDEN 371

  Fly   636 SGDHIKTWRYNTMKAWNVNWNIKCMMIQFED-ENVVFSCHSADCKVVHEFIGGYIFMSMRSK--- 696
            |...:|.|....::.|..  :.||..:.|.| ::..:|..:.|.:.:.:.|.||:.:.::.|   
 Worm   372 SKQILKEWPLEQVRRWVP--SAKCFSLDFGDYQDGYYSVQTTDGEKIAQLIQGYVDIILKKKRTQ 434

  Fly   697 -------DTNQTLNEEL 706
                   |...|:.|::
 Worm   435 DHQGIEGDEGSTMLEDM 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fit2NP_648947.1 B41 259..>351 CDD:214604 30/92 (33%)
FERM_M 310..>365 CDD:278785 13/55 (24%)
PH_fermitin 408..536 CDD:269943 13/127 (10%)
PH 408..515 CDD:278594 11/106 (10%)
FERM_M <557..609 CDD:278785 9/51 (18%)
FERM_C_fermitin 603..693 CDD:270026 26/94 (28%)
tln-1NP_490886.2 FERM_f0 4..84 CDD:293120 4/27 (15%)
B41 89..341 CDD:214604 81/520 (16%)
FERM_N 91..>135 CDD:286467 11/46 (24%)
FERM_M 232..341 CDD:278785 36/298 (12%)
FERM_C_Talin 337..428 CDD:269973 26/92 (28%)
Talin_middle 525..683 CDD:286254
I_LWEQ 698..>783 CDD:302998
talin-RS 1667..1839 CDD:213393
VBS 1863..1984 CDD:286057
talin-RS 1985..2146 CDD:213393
ILWEQ 2357..2549 CDD:214607
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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