DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Exn and ROM1

DIOPT Version :9

Sequence 1:NP_001097630.2 Gene:Exn / 39900 FlyBaseID:FBgn0261547 Length:2029 Species:Drosophila melanogaster
Sequence 2:NP_011584.2 Gene:ROM1 / 852961 SGDID:S000003302 Length:1155 Species:Saccharomyces cerevisiae


Alignment Length:1018 Identity:184/1018 - (18%)
Similarity:337/1018 - (33%) Gaps:292/1018 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1180 NDSGVDMRNHRLPKPPPPQNQVYEFVRKFKDFISSKKSPKGSQQKLYENTPASTLFYVECSKRTE 1244
            |.:.:|:||          ...||...|.:...:|..:...|..|:..|....::...|....||
Yeast     2 NSNELDLRN----------KYFYEIFGKKRKSDTSTPTQLFSGSKVQTNINEISITNDEDEDSTE 56

  Fly  1245 DVYENT----------DFGPERIPAPETKGPVHQEQA-PVLRAKQKNGKSLRSRLRKSLVGSSFD 1298
            |  ||.          |.|.....||:...  ||.:| |||.        :.:.|..|  ..||.
Yeast    57 D--ENKASLKDYTLGHDTGARYRIAPDCSS--HQLKASPVLH--------ISTNLNSS--PQSFT 107

  Fly  1299 TKQLSSLAPTRSTFYVEDPEGSLPALPLEPEIHGSGELDSGFSDKNCTPLPE-TPKFSTV----A 1358
            ..|:|   ||.....:.|                |...|.|   .:||.... :.|.|.|    .
Yeast   108 GDQIS---PTNKKISIND----------------STRQDKG---NSCTTTSSPSQKRSNVLLPHV 150

  Fly  1359 RKAKKEAKANRRRTTIGLRPNDP----PPPPPPMTGNKSPLDP--ERELDAEQTTSWYA------ 1411
            ||....:..:..:.: |....||    .||.|...|:...|..  ..:..:..|:|.:|      
Yeast   151 RKHSSPSLLSFSKNS-GSHMGDPNQLSTPPTPKSAGHTMELHSSFNGKHSSSSTSSLFALESLKT 214

  Fly  1412 ----------ECGVFKQATN-----------GAVSPRGDEPVTPTP------------------- 1436
                      ....:::.||           ..||......:..||                   
Yeast   215 QNRRSSNSSNHSSQYRRHTNQHQRHHSRSKSSPVSLTEISMIKGTPLVYPALLSLIAIKFKQTIK 279

  Fly  1437 -SGHGGVSSWYAES----GLYQTSGISVASSSGSSGVSTGN-------------EAGLGD----- 1478
             |.|..:...|.:|    ....|..:.:.|...:.|:..|.             :.|:.|     
Yeast   280 LSTHKKMGLLYRDSFTGKQAIDTLCLIIGSLDRNLGMLIGKSLEAQKLFHDVLYDHGVRDSVLEI 344

  Fly  1479 -ELSSE----PHSLFSNEPLYQMY--SAAKLESITRDLEAHG----------SSDGYEEIGLQAK 1526
             |||||    .|...|:..:...:  |::.:.|:....|.:|          |:...|::.....
Yeast   345 YELSSESIFMAHQSQSSTSIANTFSSSSSSVNSLRTKTEIYGVFVPLTHCYSSTCSLEKLCYSIS 409

  Fly  1527 AKPEPLVKPRPTALQ------------------LVEPKNGPSRTLW-SEIPEVIHSCILPTLTSR 1572
            .         |..||                  |...|....|..| :.:|:    .:..:|:.:
Yeast   410 C---------PNRLQQQANLHLKLGGGLKRNISLALDKEDDERISWTNSVPK----SVWESLSKQ 461

  Fly  1573 ERSLQEAKFEIITSEASYLKSLNLLRRHFMNHNAFLDSSVLSAKDR----KALFSYIVPVHECSE 1633
            :...|||.:|:.|:|..::|||.::|..||  ...|:::::.:..|    |.:|::|..::..:.
Yeast   462 QIKRQEAIYELFTTEKKFVKSLEIIRDTFM--KKLLETNIIPSDVRINFVKHVFAHINEIYSVNR 524

  Fly  1634 RLLTELEACWQDNIMLLGLSRCIYE-----------IAERHFHVYVAFCEHQGRMDRTLRRLKES 1687
            ..|..|......:.:..|::....:           ||.|.:..|:  .|.|..::....|..: 
Yeast   525 EFLKALAQRQSLSPICPGIADIFLQYLPFFDPFLSYIASRPYAKYL--IETQRSVNPNFARFDD- 586

  Fly  1688 KESLAFQQHLERLEASPSCCGLNLHSFLMLPMQRITRLPLLIDAVFSKESPL-NREEYESWKLTL 1751
                         |.|.|.....:.|||...:.|..|..||:..:.....|: ::::.:......
Yeast   587 -------------EVSNSSLRHGIDSFLSQGVSRPGRYSLLVREIIHFSDPVTDKDDLQMLMKVQ 638

  Fly  1752 ALVQKVVGQCNEAANRWEQAFELERIARQLEFPSHVRALAIAPVGVPRAGAKPRFLVKRGELTHL 1816
            .|::.::.:.:.|:...:..::::.:.:::.|.:....|.:        ..:.|.:...|.|:. 
Yeast   639 DLLKDLMKRIDRASGAAQDRYDVKVLKQKILFKNEYVNLGL--------NNEKRKIKHEGLLSR- 694

  Fly  1817 LWRGEDAKLTFGKRLTKISIYAFLFSDLLLLCKRRGESCF---SVFD---------YCPRSML-- 1867
                :|...|.......|..|  |..::||..|.:..:.:   :||.         .||...:  
Yeast   695 ----KDVNKTDASFSGDIQFY--LLDNMLLFLKSKAVNKWHQHTVFQRPIPLPLLFICPAEDMPP 753

  Fly  1868 ---------TLAAGDSLPQLPTKDLKDQAGKNLILMTLLENCDRKTVELVLSCPSVSDQQRWLQA 1923
                     ..:||..|||..|.:     .||.|:......  ::..::.|..|..:..|..::.
Yeast   754 IKRYVTENPNCSAGVLLPQYQTSN-----PKNAIVFAYYGT--KQQYQVTLYAPQPAGLQTLIEK 811

  Fly  1924 MRPPEAETPGEKLYESWDCPQVVAK--HSYESDE--PDVLQLELGDVVNVSRKLPDGWYQGERIR 1984
            ::..:.....|..:.::  .|:|.:  |||.:..  .|||....|.::.|:..:           
Yeast   812 VKQEQKRLLDETKHITF--KQMVGQFFHSYINTNRVNDVLICHAGKILLVATNM----------- 863

  Fly  1985 DGAVGWFPGSYTEELNSAHVRARNLKQRHRLLTFTATYLESQK 2027
                |.|..:|...:|...|..     .|::.....:.||..|
Yeast   864 ----GLFVLNYATSINQKPVHL-----LHKISISQISVLEEYK 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ExnNP_001097630.2 RhoGEF 1581..1763 CDD:279015 36/197 (18%)
PH_ephexin 1805..1931 CDD:269929 27/148 (18%)
SH3_ephexin1_like 1944..1998 CDD:212727 13/57 (23%)
ROM1NP_011584.2 ROM1 1..1155 CDD:227709 184/1018 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5422
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3601
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.