DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Exn and Arhgef2

DIOPT Version :9

Sequence 1:NP_001097630.2 Gene:Exn / 39900 FlyBaseID:FBgn0261547 Length:2029 Species:Drosophila melanogaster
Sequence 2:XP_006232705.1 Gene:Arhgef2 / 310635 RGDID:1304659 Length:1180 Species:Rattus norvegicus


Alignment Length:885 Identity:184/885 - (20%)
Similarity:292/885 - (32%) Gaps:273/885 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1183 GVDMRNHRLPKPPPPQNQVYEFVRKFKDFISSKKSPKGSQQKLYENTPASTLFYVECSKR----- 1242
            |.|...||||.                  :.|::..:..:.|.......:.:|:....:|     
  Rat    12 GEDPVPHRLPA------------------VESRERLEEVEGKDENQDNNNDVFHTSFLRRSRAFR 58

  Fly  1243 ----TEDVYENTDFGP--------ERIPAPETKGPVHQEQAPVLRAKQKNGKSL------RSRLR 1289
                |.:..:...:||        .|.....::.||.|| ||.|::.::.|..|      :.:.|
  Rat    59 ARSHTSEALKRHSWGPGKEFQDPISRRSLHSSECPVSQE-APFLQSLEELGTPLGAQQQEQQQGR 122

  Fly  1290 KSLVGSSFDTKQ-------LSSLAPTRSTFY-------------VEDPEGSLPALPLEPEIHGSG 1334
            :...|..|...|       .||:.|......             ..||.|:      ..:.|.:.
  Rat   123 EQQSGQPFHRGQSFCHLSATSSVHPATGMLSKAVSMSGINLLLDCSDPNGN------SSQSHATD 181

  Fly  1335 --------ELDSG----------FSDKNCTPLPETPKFSTVARKAKKEAKANRRR-----TTIGL 1376
                    |.|||          ||    ..|..|.:..|..::..||||..|..     |||.:
  Rat   182 LNKCGKQLEEDSGTWAGSSLRRTFS----FLLGMTGRDKTREKEKMKEAKDARYTNGHLFTTISV 242

  Fly  1377 RPNDPPPPPPPMT----GNKSPLDPERELDA-------EQTTSWYAECGVFKQATNGA------- 1423
                     ..||    .|||....|..:..       .:.....|.|...||....|       
  Rat   243 ---------SGMTMCYACNKSITAKEALICPTCNVTIHNRCKDTLANCTKVKQKQQKAALLRNNT 298

  Fly  1424 ----VSPRGDEPVTPTPSGHGGVSSWYAESGLYQTSGISVASSSGSSGVSTGNEAG-LGDE---- 1479
                ||.|........|:.....|..:.:|.|....|:|  |.|.:..|||.|.|| ..||    
  Rat   299 ALQSVSLRSKTTTRERPTSAIYPSDSFRQSLLGSRRGLS--SLSLAKSVSTTNIAGHFNDESPLG 361

  Fly  1480 ----LSSEPHSL-------------------FSNEPLYQMYSAAKLESITRDLEAHGSSDGYEEI 1521
                ||....||                   |.||.:      :..|...:|.||...|...:..
  Rat   362 LRQILSQSTDSLNMRNRTLSVESLIDEGVEVFYNELM------SDFEMDEKDFEADSWSLAVDSS 420

  Fly  1522 GLQAKAKPEPLVKPRPTALQLVEPKNGPSRTLWSEIPEVIHSCILPTLTSRERSLQEAKFEIITS 1586
            .||...|                              ||:..             |:..:|:|.:
  Rat   421 FLQQHKK------------------------------EVMKK-------------QDVIYELIQT 442

  Fly  1587 EASYLKSLNLLRRHFMNHNAFLDSSVLSAKDRKALFSYIVPVHECSERLLTEL-----EACWQDN 1646
            |..::::|.::.|.|  ....|:...:..:..:.||..:..:.:...|.|::|     :|....:
  Rat   443 ELHHVRTLKIMTRLF--RTGMLEELQMEPEVVQGLFPCVDELSDIHTRFLSQLLERRRQALCPGS 505

  Fly  1647 -----IMLLG---LSRCIYEIAERHFHVYVAFCEHQGRMDRTLRRLKESKESLA----FQQHLER 1699
                 |..||   :|:.....||:....|..||      .|..:.||..||..|    |||.:.:
  Rat   506 TRNFVIHRLGDLLISQFSGSNAEQMRKTYSEFC------SRHTKALKLYKELYARDKRFQQFIRK 564

  Fly  1700 LEASPSCCGLNLHSFLMLPMQRITRLPLLIDAVFSKESPLNREEYESWKLTLALVQKVVGQCNEA 1764
            :..|.......:...::|..||||:.|:||:.:......: .|||:.....|.||::::      
  Rat   565 MTRSAVLKRHGVQECILLVTQRITKYPVLINRILQNSHGI-EEEYQDLAAALGLVKELL------ 622

  Fly  1765 ANRWEQAFELERIARQLEFPSHVRALAIAPVGVPRAGAKPRFLVKRGELTH---LLWRGEDAKLT 1826
            :|..:...|||:.||..|..:.:...|..|  ||..|...|..:.|.:|.|   |||:....:..
  Rat   623 SNVDQDVHELEKEARLQEIYNRMDPRAQTP--VPGKGPFGRDELLRRKLIHDGCLLWKTATGRFK 685

  Fly  1827 FGKRLTKISIYAFLFSDLLLLCKRRGESCFSVFDYCPRSMLTLAAGDSLPQLPTKDLKDQAGKNL 1891
                    .:...|.:|:|:..:.:.:.  .:|....:..:.     ||..|..:|:.:|| |.:
  Rat   686 --------DVLLLLMTDVLVFLQEKDQK--YIFTSLDKPSVV-----SLQNLIVRDIANQA-KGM 734

  Fly  1892 ILMT----------LLENCDRKT-----VELVLSCPSVSD 1916
            .|::          .....||.|     .:.|..|||..|
  Rat   735 FLISSGPPEMYEVHAASRDDRTTWIRVIQQSVRLCPSRED 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ExnNP_001097630.2 RhoGEF 1581..1763 CDD:279015 46/198 (23%)
PH_ephexin 1805..1931 CDD:269929 27/130 (21%)
SH3_ephexin1_like 1944..1998 CDD:212727
Arhgef2XP_006232705.1 C1_ARHGEF2 230..290 CDD:410427 14/68 (21%)
RhoGEF 432..626 CDD:238091 48/221 (22%)
PH_ARHGEF2 666..781 CDD:275428 26/125 (21%)
SMC_prok_B <898..>1057 CDD:274008
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5422
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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