DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Exn and Net1

DIOPT Version :9

Sequence 1:NP_001097630.2 Gene:Exn / 39900 FlyBaseID:FBgn0261547 Length:2029 Species:Drosophila melanogaster
Sequence 2:XP_006254268.1 Gene:Net1 / 307098 RGDID:1305034 Length:595 Species:Rattus norvegicus


Alignment Length:554 Identity:119/554 - (21%)
Similarity:210/554 - (37%) Gaps:133/554 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1480 LSS----EPHSLFSNE---PLYQMYSAAKLESITRDLEAHGSSDGYEEIGLQAKAKPEPLVKPRP 1537
            |||    ||    ||:   ||.::.|.|.|.|..|:..........:...|:...:.....:...
  Rat    79 LSSLDLKEP----SNKRVRPLGRVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASTQKSF 139

  Fly  1538 TALQLVEPKNGPSRTLWSEIPEVIHSCILPTLTSRERSLQEAKFEIITSEASYLKSLNLLRRHFM 1602
            :...:..|....|..||||:.::   .:..:||:||...|||.:|:...|...::.|.|.|:.: 
  Rat   140 SRATVPTPTKRRSSALWSEMLDI---SMKESLTTREIKRQEAIYELSRGEQDLIEDLKLARKAY- 200

  Fly  1603 NHNAFLDSSVLSAKDRKALFSYI---VPVHECSERLLTEL-EACWQDNIM----------LLGLS 1653
             |:..|..|::|.::...:|..:   :|:|   |.||..: ||...|..:          |.|| 
  Rat   201 -HDPMLKLSIMSEEELTHIFGDLDAYIPLH---EDLLARIGEATKPDGTVEQIGHILVNWLPGL- 260

  Fly  1654 RCIYEIAERHFHVYVAFCEHQGRMDRTLRRLKESKESLAFQQHLERLEASPSCCGLNLHSFLMLP 1718
                       :.|..:|.:| ...:.|  |.:.|:....|..|:|...||....|:|.|||.:|
  Rat   261 -----------NAYRGYCSNQ-LAAKAL--LDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIP 311

  Fly  1719 MQRITRLPLLIDAVFSKESPLNREEYESWKLTLALVQKVVGQCNEAANRWEQAFELERIARQLEF 1783
            ..|:.:.|||:..:. :.:|.:..:.:..:..:.::|:|:...|......|..:.:::    ||:
  Rat   312 RSRLVKYPLLLKEIL-RHTPKDHLDVQLLEKAILIIQEVLSDINLKKGESECQYYIDK----LEY 371

  Fly  1784 PSHVRALAIAPVGVPRAGAKPRFLVKRGELTHLLWRGEDAKLTFGKRLTKISIYAFLFSDLLLLC 1848
            ....:.       .||..|. :.|:..|||               |..:...:|.|||.|:|:|.
  Rat   372 LDEKQK-------DPRIEAS-KVLLCHGEL---------------KNKSGHKLYIFLFQDILVLT 413

  Fly  1849 K---RRGESCFSVFDYCPRSMLTLAAGDSLPQLPTKDLKD----------------QAGKNLILM 1894
            :   |.....:.|:    |..:      .:.:|..:||:|                ...||:..:
  Rat   414 RPVTRNERHSYQVY----RQPI------PVQELVLEDLQDGDVRMGGSFRGAFGNSDKAKNIFRV 468

  Fly  1895 TLLENCDRKTVELVLSCPSVSDQQRWLQAMRPPEAETPGEKLYESWDCPQVVAKHSYESDE---- 1955
            ...:....::  ..|....|..:|:|...:|  .|..|.::.....:...:...|. |.:|    
  Rat   469 RFQDPSPGQS--HTLQANDVFHKQQWFNCIR--SAIAPFQRAASPLELQGLPDLHE-ECEENNPS 528

  Fly  1956 -------------PDVLQ------LELGDVVNVS 1970
                         |.|:|      ||.|..|..|
  Rat   529 AGNLRAQRRSCVLPGVMQVDHESVLECGSSVQTS 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ExnNP_001097630.2 RhoGEF 1581..1763 CDD:279015 45/195 (23%)
PH_ephexin 1805..1931 CDD:269929 27/144 (19%)
SH3_ephexin1_like 1944..1998 CDD:212727 11/50 (22%)
Net1XP_006254268.1 RhoGEF 178..354 CDD:214619 46/196 (23%)
PH_Net1 368..502 CDD:270044 32/174 (18%)
PH 387..501 CDD:278594 27/142 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5422
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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