DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Exn and Arhgef16

DIOPT Version :9

Sequence 1:NP_001097630.2 Gene:Exn / 39900 FlyBaseID:FBgn0261547 Length:2029 Species:Drosophila melanogaster
Sequence 2:XP_011248543.1 Gene:Arhgef16 / 230972 MGIID:2446219 Length:721 Species:Mus musculus


Alignment Length:761 Identity:214/761 - (28%)
Similarity:346/761 - (45%) Gaps:123/761 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1318 EGSLPALPLEPEIHGSGELDSGFSDKNCTPLPETPKFSTVARKAKKEAKANRRRTTIGLRP--ND 1380
            :.||....||...|....||:     |..|:|..|    :.|.:.| |:||     ....|  ::
Mouse    15 DSSLDEKLLEYRFHAELRLDA-----NGNPIPGLP----MVRSSLK-ARAN-----AAFEPDASE 64

  Fly  1381 PPPPPPPMTGNKSPLDPERELDAEQTTSWYAECGVFKQATNGAVSPR----GDEPVTPTPSGHGG 1441
            |.||||      ||.|.|.......:|...|   ..|..|...: |:    ..:..|.:|:.|  
Mouse    65 PLPPPP------SPEDEEPPRPIVLSTQSPA---ALKMGTQQLI-PKSLAVASKAKTKSPARH-- 117

  Fly  1442 VSSWYAESGLYQTSGISVASSSGS-------------------SGVSTGN--------------- 1472
                       |:.|.:|.|...:                   ..|:|||               
Mouse   118 -----------QSFGAAVLSKEAARRNPQLFSAPSFSLDDMDMDMVTTGNLRRNLRNQSYRAAMK 171

  Fly  1473 ----EAGLGDELSSEPHSLFSNEPLYQ---MYSAAKLESITRDLEAHGSSDG----YEEI---GL 1523
                .:..||.:...|......|...|   .|.|...:::.|.....||...    |:||   ||
Mouse   172 GPGPPSSKGDSVQLGPKLQALAEEAAQPPSRYPAKNKKTLGRKRAHKGSFKDDPQLYQEIRERGL 236

  Fly  1524 QAKAKPEPLVKPRPTA--------LQLVEPKNGPSRTLWSEIPEVIHSCILPTLTSRERSLQEAK 1580
            ....:.:..:...|:.        ..:|.....|::..||::|||:.|.:|.||::.||..|||.
Mouse   237 NTSHESDDDILDEPSGPVGTQRADTTIVVKSYRPAQLTWSQLPEVLESGVLDTLSTEERKRQEAI 301

  Fly  1581 FEIITSEASYLKSLNLLRRHFMNHNAFLDSSVLSAKDRKALFSYIVPVHECSERLLTELEACWQD 1645
            |||:|||.|||.||::|...|:.....  .:.::..:...|||.|:.|...|::....||...:.
Mouse   302 FEILTSEFSYLHSLSILVTEFLQSREL--RATMTQTEHHHLFSNILDVMSASQKFFEALEQRHKA 364

  Fly  1646 NIMLLGLSRCIYEIAERHFHVYVAFCEHQGRMDRTLRRLKESKESLAFQQHLERLEASPSCCGLN 1710
            .:.:..:|..:.:.|:.|||.|:|:|.::....|||::|  |..:.||:..|:.:|..|:|.||.
Mouse   365 QVCVEDISDILEDHAQHHFHPYIAYCSNEVYQQRTLQKL--SNSNAAFRDVLKEIEKRPACGGLP 427

  Fly  1711 LHSFLMLPMQRITRLPLLIDAVFSKESPLNREEYESWKLTLALVQKVVGQCNEAANRWEQAFELE 1775
            :.|||:|||||:||||||.|.:..|... :.|.|::....|..:.|:|.||||.|::.|:..::.
Mouse   428 MISFLILPMQRVTRLPLLTDTLCLKTQG-HPERYKAASQALKAISKLVKQCNEGAHKMERTEQIY 491

  Fly  1776 RIARQLEFPSHVRALAIAPVGVPRAGAKPRFLVKRGELTHLLWRGEDAKLTFGKRLTKISIYAFL 1840
            .:..||:| ..|::|.:.        :..|:|:|||||..|    |::.: |.|..::.:.|.||
Mouse   492 TLNMQLDF-GKVKSLPLI--------SASRWLLKRGELFLL----EESSI-FRKIASRPTCYLFL 542

  Fly  1841 FSDLLLLCKRRGESCFSVFDYCPRSMLTLAAGD-SLPQLPTKDLKDQAGKNLILMTLLENCDRKT 1904
            |:|:|::.|::.|..:.|.||.....:.:...: |.|.||....:..:......:.||.|.:.:.
Mouse   543 FNDVLVVTKKKSEESYLVQDYAQLDHVQVRKLEPSEPLLPGGSSRSSSVPYPFQVNLLHNSEGRQ 607

  Fly  1905 VELVLSCPSVSDQQRWLQAMRPPEAETPGEKLYESWDCPQVVAKHSYESDEPDVLQLELGDVVNV 1969
            .:::||..|.||:.||:.|:...|.:..|  :....:.|||....:|.:.:.|.:.|:..|:|.|
Mouse   608 EQILLSSDSASDRARWITALTYKERQWQG--ITNKGELPQVEVTKAYFAKQADEITLQQADIVLV 670

  Fly  1970 SRKLPDGWYQGERIRDGAVGWFPGSYTEELNSAHVRARNLKQRHRL 2015
            .:: .|||..|||:|||..||||.|:...:.|......|:::..||
Mouse   671 LQE-EDGWLHGERLRDGETGWFPESFAHSITSRVAVEGNVRRMERL 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ExnNP_001097630.2 RhoGEF 1581..1763 CDD:279015 65/181 (36%)
PH_ephexin 1805..1931 CDD:269929 38/126 (30%)
SH3_ephexin1_like 1944..1998 CDD:212727 22/53 (42%)
Arhgef16XP_011248543.1 RhoGEF 300..478 CDD:366202 65/182 (36%)
PH_ephexin 501..634 CDD:269929 40/145 (28%)
SH3_ARHGEF16_26 645..696 CDD:212871 22/51 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 118 1.000 Domainoid score I5824
eggNOG 1 0.900 - - E1_COG5422
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4837
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm43520
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12845
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3601
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.890

Return to query results.
Submit another query.