DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Exn and rhgf-2

DIOPT Version :9

Sequence 1:NP_001097630.2 Gene:Exn / 39900 FlyBaseID:FBgn0261547 Length:2029 Species:Drosophila melanogaster
Sequence 2:NP_001368191.1 Gene:rhgf-2 / 173748 WormBaseID:WBGene00006476 Length:1149 Species:Caenorhabditis elegans


Alignment Length:1122 Identity:222/1122 - (19%)
Similarity:369/1122 - (32%) Gaps:409/1122 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1048 ATT--DATANEAQFI---VVRERFKPHRTRSPDWSKRIRDKRLQQKKAISCIEDDSDHYYETLSP 1107
            |||  .|||..|.|:   .:||  :|...|..|                   .|||..:.|:.|.
 Worm    33 ATTLLAATACPAAFVDLDSIRE--EPPSPRPLD-------------------RDDSVFFRESCST 76

  Fly  1108 LGNKRHSTQLVRQSQDGNRSGGVRSSHRRSK-----NHSAS--AHTLGEHVVISDDYDSFETDSD 1165
            :|:.......:..|...:....:.|..|:.|     |.|:|  .:|............|.....|
 Worm    77 IGSPLDELPALPTSSTSSPFKFMESIQRKRKSMFRRNQSSSNLINTEKRRTTRRPSLPSIPPTID 141

  Fly  1166 D---------------HGDGEPDLRQRNYNDSGVDMRNHRLPKPPPPQNQVYEFVRKFKDFISSK 1215
            :               |.|...:..|||    .:|.|.|.:...||   |:..|:..|||....:
 Worm   142 EMSSSVGHARSRRPSLHNDWTNEHAQRN----ALDNRIHHIDIDPP---QINYFIAVFKDLDDRE 199

  Fly  1216 KSPKGSQQKLYENTPASTLFYVECSKRTEDVYE-----------NTDFGPER--IPAPETKGPVH 1267
            |.   |.:.:          ..:|::...:|:|           :.:|..|:  .|.||..|   
 Worm   200 KD---SVEHI----------RFDCNQLIYEVFEPFLRIRGLTINDVEFFLEKSSTPIPENSG--- 248

  Fly  1268 QEQAPVLRAKQKNGKSLRSRLRKSLVGSSFDTKQLSSLAPTRSTFYVEDPEGSLPALPLEPEIHG 1332
                    |:...|:.:..|.|.:          :..:..||:|..:::                
 Worm   249 --------ARFLAGQRIFVRGRGN----------MKVVRHTRATHSMDE---------------- 279

  Fly  1333 SGELDSGFSDKNCTPLPETPKFSTVARKAKKEAKANRRRTTIGLRPNDPPPPPPPMTGNKSPLDP 1397
            |.|             ..|.|.|..| .::|.:..|.|....|.|.:      |.:.|:..    
 Worm   280 SNE-------------RATRKMSAEA-VSRKSSFVNSRILNRGSRNH------PGLNGSDD---- 320

  Fly  1398 ERELDAEQTTSWYAECGVFKQATNGAVSPRG----DEPVTPTPSGHGGVSSWYAESGLYQTSGIS 1458
                         |||    ::.:.::|.|.    |||........||...              
 Worm   321 -------------AEC----RSNDSSLSVRDSWQYDEPSCSEVPDDGGTRR-------------- 354

  Fly  1459 VASSSGSSGVST--GNEAGLGDELSSEPHSLFSNEPLYQMYSAAKLESITRDLEAHGSSDGYEEI 1521
             |.|..||.:|.  |.|.|   ::..|         ::::.:..|.::   |||.          
 Worm   355 -ARSVTSSRISLFFGKETG---KIEKE---------MFRILNQKKEDT---DLEY---------- 393

  Fly  1522 GLQAKAKPEPLVKPRPTALQLVEPKNGPSRTLWSEIPEVIHSCILPTLTSRERSLQEAKFEIITS 1586
                                       |:..|..:..|::|:  ..:|:.:....|||.:||:|:
 Worm   394 ---------------------------PTYKLEKDWREIVHN--HESLSDKSIKQQEAIWEIVTT 429

  Fly  1587 EASYLKSLNLLRRHFMNHNAFLD-----SSVLSAKDRKALFSYIV---------------PV--- 1628
            |..|:|    |.|:..|.:.:|.     ..:...::|...|:::.               |:   
 Worm   430 EFRYIK----LLRYLSNLSFYLTDLQNCGFLKDIENRLVFFNFVTLFNVNYDSLWLQSIEPILAK 490

  Fly  1629 -HECSERL-LTELEACWQDNIMLLGLSRCIYEIAERHFHVYVAFCEHQGRMDRTLRRLKESKESL 1691
             .|..|.| :..|:..::|   :...|||.     .:||:     .|...:....::||||:.  
 Worm   491 SRETGEPLDVNYLQNGFRD---IENWSRCY-----TNFHL-----AHSDSLKHIQKKLKESEN-- 540

  Fly  1692 AFQQHLERLEASPSCCGLNLHSFLMLPMQRITRLPLLIDAVFSKESPLNREEYESWKLTLALVQK 1756
             |:..:...||..:.....|.....:||||:||..||:.||....:..|..|..|..:..|  :.
 Worm   541 -FRDFVTWAEAQENLDRQKLIDTFSVPMQRLTRYNLLLKAVLKVTTDENEREMISNLVDCA--ES 602

  Fly  1757 VVGQCNEAANRWEQAFELERIARQLEFPSHV------RALAI---------APVGVPRAGAKPRF 1806
            ...|.|:..|..:....|..:.|.:|.|.:|      |...:         .|:..||   ||  
 Worm   603 ATAQLNKELNNNDLRAMLGDVMRTIEGPDYVDQDELERLFNLKLPLNLGDFMPLLHPR---KP-- 662

  Fly  1807 LVKRGELTH--LLWRGEDAKLTFGKRLTKISIYAFLFSDLLLLCKR----------------RGE 1853
                   ||  |::|| |.::..||:.:|..::..:|:|:.|:|::                .|:
 Worm   663 -------THRTLIYRG-DLRMQEGKKGSKADVHCIIFTDMFLICRKVQGKKDRLKILKPPIHMGK 719

  Fly  1854 SCFSVFDYCPRSMLTLAAGDSLPQLPTKDLKDQAGKNLILMTLLENCDRKTVELVLS--CPSVSD 1916
            ..|..|                        .||.|..|:.:|     |..|.:.:.|  .....|
 Worm   720 MMFHYF------------------------ADQNGFYLVHLT-----DFHTAQALYSMHTSGPED 755

  Fly  1917 QQRWLQAMRPPEAETPGEKLY-ESWDCPQVVAKHSYESDEPDVLQLELGDVVNVS-----RKLPD 1975
            ..||...::....|.  :|:: :||.        .....|..:.:...|.::..|     |.||.
 Worm   756 TLRWTDMLKMALDEF--KKIHRDSWS--------QQNQQESPLDEYGRGFIMEPSSFYSQRMLPP 810

  Fly  1976 GWYQGE------------------------RIRDGAVGWFPGSYTEELNSAHVRARNLK---QRH 2013
            |:.|.:                        ..|..||     |.||:|: .|....::|   .||
 Worm   811 GYAQQQMPVIHRKCSSMDSQAVAAHAHLNYMHRSSAV-----SSTEQLD-RHSGTDSMKCSPPRH 869

  Fly  2014 RLLTFT--ATYLESQKS 2028
            :|...:  |..|.|.||
 Worm   870 KLSVASCHANPLSSSKS 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ExnNP_001097630.2 RhoGEF 1581..1763 CDD:279015 47/206 (23%)
PH_ephexin 1805..1931 CDD:269929 27/145 (19%)
SH3_ephexin1_like 1944..1998 CDD:212727 13/82 (16%)
rhgf-2NP_001368191.1 RBD_PLEKHG5 186..262 CDD:340588 18/99 (18%)
RhoGEF 419..608 CDD:238091 50/210 (24%)
PH_PLEKHG5_G6 665..765 CDD:270064 25/129 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.