DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmpt and Cp190

DIOPT Version :9

Sequence 1:NP_996113.2 Gene:Lmpt / 39889 FlyBaseID:FBgn0261565 Length:2147 Species:Drosophila melanogaster
Sequence 2:NP_524359.2 Gene:Cp190 / 41848 FlyBaseID:FBgn0000283 Length:1096 Species:Drosophila melanogaster


Alignment Length:1139 Identity:217/1139 - (19%)
Similarity:392/1139 - (34%) Gaps:333/1139 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   754 TAPWRDQ-----YGLLMEGLSDFYDF---------TASVNPSRSRSASRNPSPAPKNVANLM-DG 803
            |..:||.     :.|::...:|:::.         .|.:.|:..::....|      :.|.| .|
  Fly    33 TLQFRDNSQLKVHRLVLSACTDYFNVLEQTCEIVDDALIMPNEFQADVVVP------IVNFMYTG 91

  Fly   804 DTERSLEVYDDTQEGVMAGELNCESVLQLLESNLNETESTNDQ--------LQVQTVADDARDGK 860
            ..|..|::|.....  .|.|:|...:|:|||::....|:.|.|        ::.:||...:    
  Fly    92 TLEFELKMYGKLLR--TAKEMNMTVLLKLLEAHRRTMENVNRQQRPPSPKGIRRRTVGQPS---- 150

  Fly   861 SILPMVHEPLESSALGAVLEERG-----------REPSVGRIQSR-SRSRSRSPLPTSENLEKSI 913
            |.||      :...||...:.|.           :..|.|...|| |...:|||...|.|:::..
  Fly   151 SGLP------QQRVLGPSPQSRNVATPIAQRANTQRGSTGNTMSRTSGGSNRSPYGDSSNVKQEP 209

  Fly   914 HKRRERLIK--QNDELAERLSHSSPEDSMEIETSDNGRLSPTLEVTLPQPVIEINEMADE----- 971
            ....|:|.|  .|::...:.|..||...           .|:||        |:.|.|::     
  Fly   210 TSPFEQLRKGYNNNKRPAQTSLLSPPSK-----------KPSLE--------EVKEFAEQQRMRK 255

  Fly   972 --PMEDAETTPE-EMRLFVETLRA-----ERNARSRSRSRSRSPLPTAGNIEKSLESRRLK---- 1024
              ..|..:..|| :..:..:.:.|     :......|.|:.:||..|...:|....:..||    
  Fly   256 QIAAEYGDNDPEYDGGMLYDDVHAGDDDDDDMPPQPSTSKQQSPQGTQTQLEHGSTTIILKQDSP 320

  Fly  1025 --------------RIQHNDEIFEKLHDQMSSPQII-----IESASPPSLPLPLPTISIEIAEPP 1070
                          ::.|...|.|.|...   |.|:     |:....|:.|          |.|.
  Fly   321 SQTPTIIVKDSSNAKLNHTKIIAEVLRQY---PHIVKGHKNIKLKIMPNTP----------AAPT 372

  Fly  1071 EENASHTEAEPEDTPESMARLFEQLRLN-------------RVRSHSRSRSRSPLPT-------- 1114
            |::|..|...|.:...:.....::|.::             :..:.|:.:|.:...|        
  Fly   373 EKSAPATVKPPANQSSATTSPHKKLHVSFKADKSTPLITAQQKAASSQQKSGTSQTTGNQGTGAN 437

  Fly  1115 -PANLEQSVQKRR------ERLIAQNDQFFEVLQERARTPEPETRLTVEYVYEYVQEKDEQVGEG 1172
             ||| ..:.||||      ..||||..:         .|..|...|..                |
  Fly   438 PPAN-TAAAQKRRIDSKTMHALIAQGAE---------NTTGPWLCLRC----------------G 476

  Fly  1173 RDKRSLS-PS-----RSRSQSQEKALD-----------------DFHLMLNLEGSEL-------- 1206
            .:.|.:| ||     |....:.::.:|                 .||:.:..:...|        
  Fly   477 VNGRPISIPSYRGFRRHLINTHKETIDPALCEHCGWRSVNNRELHFHMYMEHQTKSLLYTFAECA 541

  Fly  1207 ------RTLRKNSEELESVLAVGAKQ----------REVDMDALEKLHNANEEIELRVLSPTNSE 1255
                  ||..:....:..|.....||          :|:.:....|.::..:.:|..::..|:.|
  Fly   542 LCNQSYRTKGELEAHINEVHTDDNKQQCIYCNKVFEQELQLYRHMKSYHKEQALEDGIIDETDEE 606

  Fly  1256 L----------ERVVEMTRENPDMDRTVSEVA--------------RDLQDELMASGFKRSTYV- 1295
            .          |...|...|.....|.:|:::              ..||:|.:....:...:| 
  Fly   607 FLGSQDEEEEAEGDEEQEPEQTGKVRILSDISLPATSAITVQQAQQEQLQEEDVEQVQQEVKFVG 671

  Fly  1296 --GESLDLGSDQFKELRREAAQFQRSRSPSPGSSMDYAREQAA-AQRELQTAIL--------DSL 1349
              |..::|..:|.||:..:..| |::.:.:.|..|..:..:|. .::|.....|        ||.
  Fly   672 ADGNEVELTDEQRKEILSQLNQ-QQAGATAGGVVMVLSEPEAEHVKQETDEKSLAGTEEEYDDSQ 735

  Fly  1350 TESRLGAKPKTYSEERTGEFEDISAAQLDDLRHRTAEFQRSRSQS---------RSPLREVELTQ 1405
            ..|.|||.....|.::  ...|.|...:|:|.........|..||         |..:.| :|.:
  Fly   736 IYSELGAADSVESAKK--NIADESKESIDNLEWAENLIAESEEQSNKEPKSDKPRDDISE-KLKE 797

  Fly  1406 LR----------DIEAESAKRELQDQLLDRLAASSINFEN-------FSRHLNADFLDSERRASD 1453
            |.          |::.:.|..||..:|.::....:::.|.       .|.|...:....|:.:.:
  Fly   798 LTGDWTEDENDDDVDDKPATAELASELANKDPEPTVHEEEDDIDLALQSLHKGPEEATEEKASEE 862

  Fly  1454 SALMGDMEPDEYHHFRRYSLAQEQPVEEYPSDDYVYISQIEVRTLTGTRTWLKEDFYTHEPNDFS 1518
            |....|...|...:..  |..::..|:...:|:....::::::         ||....::..:|.
  Fly   863 SVTSADDAVDAVPNIN--SQPEKMDVDSEAADEKASKAEVQIK---------KEAELENDQEEFI 916

  Fly  1519 DSKSPVRDEDSWA---RAVLAAEAE---AAEFDSTNAIYSYDIVGDHENLDQERS--SSNDSEDT 1575
            ...||:...||.|   .||.|:|.|   ..|.|:.......:::.:.|..|||:.  .|.::..|
  Fly   917 KEDSPIPHSDSVAELREAVTASEGEDDVHLEADNIRKELLDELIAEAEKPDQEKDIVQSEENATT 981

  Fly  1576 RQTVVEIDDEDEF---------EFELD----EGISDNNERTQPTDESH------HDTSECEEAER 1621
            ......:.|||:.         :.|:|    |..::|||.|:..||..      :.|.:...||:
  Fly   982 EALDRSVTDEDDLVPPTQVSTEQMEIDEPAAEKAAENNEDTRTADEKEAVEDKPNQTQDVTTAEK 1046

  Fly  1622 ----NADRYENRGAQDWEEVDDVEDFL-DYGFDD 1650
                :|...:...:.:...||.|:..: ::|.||
  Fly  1047 PTLESAKAGDEATSGEAASVDKVKSLISEWGDDD 1080

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LmptNP_996113.2 GBP_C <103..201 CDD:303769
ARGLU 110..255 CDD:291991
coiled coil 170..181 CDD:293879
coiled coil 190..201 CDD:293879
Cp190NP_524359.2 BTB 20..122 CDD:279045 21/96 (22%)
BTB 31..127 CDD:197585 21/101 (21%)
C2H2 Zn finger 540..568 CDD:275371 4/27 (15%)
C2H2 Zn finger 569..586 CDD:275371 1/16 (6%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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