DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lmpt and Dmp1

DIOPT Version :9

Sequence 1:NP_996113.2 Gene:Lmpt / 39889 FlyBaseID:FBgn0261565 Length:2147 Species:Drosophila melanogaster
Sequence 2:XP_006250684.1 Gene:Dmp1 / 25312 RGDID:2508 Length:504 Species:Rattus norvegicus


Alignment Length:626 Identity:130/626 - (20%)
Similarity:220/626 - (35%) Gaps:193/626 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1535 LAAEAEAAEFDSTNAIYSYDIVGDHENLDQERSSSNDSEDTRQTVVEIDDEDEFEFELDEGISDN 1599
            |:.....|.:.:|.:..|.:..|   ||.|......:||.:.::.|.           .||.:::
  Rat    13 LSCALPVARYQNTESESSEERTG---NLAQSPPPPMNSESSEESKVS-----------PEGQANS 63

  Fly  1600 NERTQPTDESHHDTSECEEAERNADRYENRGA--------QDWEEVDDVEDFLD--YGFDDGAV- 1653
            :         |.|:||..| |..:||.:.|.|        .|.::.:|.:|..|  :|.:|... 
  Rat    64 D---------HTDSSESGE-ELGSDRSQYRPAGGLSKSAGMDADKEEDEDDSGDDTFGDEDNGPG 118

  Fly  1654 ------GGATPY-SDPDSFIEQIYNEAIKNRKQSGILREYETIVQEQLPSDLSESEKEKS----- 1706
                  ||.:.. ||.||......:|...:::.|.          :..|||..:...:::     
  Rat   119 PEERQWGGPSRLDSDEDSADTTQSSEDSTSQENSA----------QDTPSDSKDHHSDEADSRPE 173

  Fly  1707 ------GSDSEKYALWAKTRELERSH-SGTRHSDVDIALGLIPESDHRDSEMRYLGDAHVVARQS 1764
                  .|:||:|.:...: |.|.|| .|:...|..:      :||...|            .:|
  Rat   174 AGDSTQDSESEEYRVGGGS-EGESSHGDGSEFDDEGM------QSDDPGS------------TRS 219

  Fly  1765 TRLRTRY---GFNPKLEVGDLEDDIEVDLNYKPKREYNWRKNFR----LDDNEEGE------RSV 1816
            .|..||.   |...:...||.|.....|.:.....|::.||:||    .::::.||      |..
  Rat   220 DRGHTRMSSAGIRSEESKGDHEPTSTQDSDDSQDVEFSSRKSFRRSRVSEEDDRGELADSNSRET 284

  Fly  1817 QVKTEED--EEQEARDQFEEEFGWQDREQELEEELYQDHEQPLYANEENGEIENVELLENRRISL 1879
            |..:.||  .::|:|.:.:|:    ..|.:.:|:..:..:....::||.||              
  Rat   285 QSDSTEDFRSKEESRSETQED----TAETQSQEDSPEGQDPSSESSEEAGE-------------- 331

  Fly  1880 GGESITLFSRSPVREILPDVPEELPQEEEALEEQPEAVAPLEDLPAEKPKKKKSKKKLRKGSKTE 1944
                                    |.:|.:.|.| |.||                          
  Rat   332 ------------------------PSQESSSESQ-EGVA-------------------------- 345

  Fly  1945 EELRDDN-DSDTQMGSSRRSDDQEPTDPPKRKTRSRRSSRSSLTNEEPNGGSGPFSPRSSLAFVG 2008
            .|.|.|| |:.:|.|..|   |.|.::..:..|.|  ||.|..|.|:     |......||:...
  Rat   346 SESRGDNPDNTSQTGDQR---DSESSEEDRLNTFS--SSESQSTEEQ-----GDSESNESLSLSE 400

  Fly  2009 ESLEGIAEFEPQERE--EEQSTKKRTKKRKKTSTKECKEEAKEETQTQAIDDSQLDRALAAALAE 2071
            ||.|...:.:...:|  :.||..:.::.::..|.::.:.|...::.:|....|:.:         
  Rat   401 ESQESAQDEDSSSQEGLQSQSASRESRSQESQSEQDSRSEENRDSDSQDSSRSKEE--------- 456

  Fly  2072 IAPVSVSTNLTPESTHQNLLSTISTGQSVCITPASSIEEIG 2112
                |.||..|..|...|....|.......|..|...:.||
  Rat   457 ----SNSTGSTSSSEEDNHPKNIEADNRKLIVDAYHNKPIG 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LmptNP_996113.2 GBP_C <103..201 CDD:303769
ARGLU 110..255 CDD:291991
coiled coil 170..181 CDD:293879
coiled coil 190..201 CDD:293879
Dmp1XP_006250684.1 DMP1 1..504 CDD:284637 130/626 (21%)
PHA02664 <112..195 CDD:177447 17/93 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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