DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh4 and opn6a

DIOPT Version :10

Sequence 1:NP_476701.1 Gene:Rh4 / 39887 FlyBaseID:FBgn0003250 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001073125.2 Gene:opn6a / 780836 ZFINID:ZDB-GENE-061201-30 Length:419 Species:Danio rerio


Alignment Length:336 Identity:83/336 - (24%)
Similarity:146/336 - (43%) Gaps:36/336 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 PDQIQYIPEHW------LTQLEPPAS--MHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPS 89
            |.|:..||  |      |...|||.|  ...::||:.:.|...|..||.:||::....:|...|:
Zfish     6 PLQVVNIP--WRNNNFSLMSREPPLSDQGETIIGVYLLILGWLSWFGNSIVIFVLFRQRSTLQPT 68

  Fly    90 NMFVLNLAVFDLIMCL----KAPIFIYNSF-HRGFALGNTW-CQIFASIGSYSGIGAGMTNAAIG 148
            :...|||||.|..:.:    :..:.|:|.| ..|:.:.:.| ||:........|:.:..|...|.
Zfish    69 DYLTLNLAVSDASISVFGYSRGILEIFNIFKDSGYIISSVWTCQVDGFFTLVFGLSSINTLTVIS 133

  Fly   149 YDRYNVITKPMNRN-MTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNF 212
            ..|:.....|...: :|.:...:..:.||:....|...|:.. |..:...||.| |..|::..|:
Zfish   134 ITRFIKGCHPHKAHCITNSTVAVCVVFIWIGAFFWSAAPVLG-WGSYTDRGYGT-CEIDWVKANY 196

  Fly   213 DT--RLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLRSNVDKSKETAE 275
            .|  :.::.:||.|.|:.|.|::|:.|..|:..|           |:.|..:...::...:...|
Zfish   197 STIHKSYIISIFIFCFLVPVLLMLFCYISIINTV-----------KRGNAMNADGDLSDRQRKIE 250

  Fly   276 IRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMI-PACTCKLVACIDPFVYAISHP 339
            ..:...:|.||..|.::|:||.|:|:..|:|   ...|..|.| .....|..:..:|.:|.....
Zfish   251 RDVTIVSIVICTAFILAWSPYAVVSMWSAWG---FHVPNLTSIFTRLFAKSASFYNPLIYFGLSS 312

  Fly   340 RYRLELQKRCP 350
            ::|.::....|
Zfish   313 KFRKDVSVLLP 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh4NP_476701.1 7tmA_photoreceptors_insect 55..345 CDD:320207 72/299 (24%)
TM helix 1 56..82 CDD:320207 8/25 (32%)
TM helix 2 89..114 CDD:320207 7/28 (25%)
TM helix 3 126..156 CDD:320207 6/29 (21%)
TM helix 4 166..186 CDD:320207 3/19 (16%)
TM helix 5 214..243 CDD:320207 10/30 (33%)
TM helix 6 273..303 CDD:320207 10/29 (34%)
TM helix 7 313..338 CDD:320207 6/25 (24%)
opn6aNP_001073125.2 None

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