DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh4 and OPN1LW

DIOPT Version :10

Sequence 1:NP_476701.1 Gene:Rh4 / 39887 FlyBaseID:FBgn0003250 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_064445.2 Gene:OPN1LW / 5956 HGNCID:9936 Length:364 Species:Homo sapiens


Alignment Length:338 Identity:89/338 - (26%)
Similarity:142/338 - (42%) Gaps:31/338 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLI-MCLKAPIFIYN 113
            |..::::..|:.||:..||...||:|:......|.||.|.|..::||||.||. ..:.:.|.|.|
Human    49 PRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIASTISIVN 113

  Fly   114 SFHRGFALGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNRNMTF-TKAVIMNIII-W 176
            .....|.||:..|.:.....|..||....:.|.|.::|:.|:.||.. |:.| .|..|:.|.. |
Human   114 QVSGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFG-NVRFDAKLAIVGIAFSW 177

  Fly   177 LYCTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNF--DTRLFVGTIFFFSFVCPTLMILYYYSQ 239
            ::...|...|:.. |.|:.|.|..|||..|..|.:.  ..:.::..:.....:.|..:|:..|.|
Human   178 IWAAVWTAPPIFG-WSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQ 241

  Fly   240 IVGHVFSHEKALREQAKKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGA 304
            :       ..|:|..||:.. ||      :|.:.||..:.:..:.:.|.:.|.|.||...:...|
Human   242 V-------WLAIRAVAKQQK-ES------ESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAA 292

  Fly   305 FGDKSLLTPGATMIPACTCKLVACIDPFVYAISHPRYR---LELQKRCPWLGVNEKSG-EISSAQ 365
            ........|....:||...|.....:|.:|...:.::|   |:|      .|.....| |:|||.
Human   293 ANPGYAFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQL------FGKKVDDGSELSSAS 351

  Fly   366 STTTQEQQQTTAA 378
            .|........:.|
Human   352 KTEVSSVSSVSPA 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh4NP_476701.1 7tmA_photoreceptors_insect 55..345 CDD:320207 79/297 (27%)
TM helix 1 56..82 CDD:320207 8/25 (32%)
TM helix 2 89..114 CDD:320207 9/25 (36%)
TM helix 3 126..156 CDD:320207 8/29 (28%)
TM helix 4 166..186 CDD:320207 5/20 (25%)
TM helix 5 214..243 CDD:320207 4/28 (14%)
TM helix 6 273..303 CDD:320207 7/29 (24%)
TM helix 7 313..338 CDD:320207 6/24 (25%)
OPN1LWNP_064445.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
7tmA_LWS_opsin 42..333 CDD:320209 79/299 (26%)
TM helix 1 55..81 CDD:320209 8/25 (32%)
TM helix 2 88..115 CDD:320209 10/26 (38%)
TM helix 3 126..156 CDD:320209 8/29 (28%)
TM helix 4 167..189 CDD:320209 6/21 (29%)
TM helix 5 216..246 CDD:320209 4/36 (11%)
TM helix 6 261..291 CDD:320209 7/29 (24%)
TM helix 7 301..326 CDD:320209 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.

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