Protein Alignment Rh4 and valopa

DIOPT Version :10

• Sequence 1: NP_476701.1
• Gene: Rh4 / 39887
• FlyBaseID: FBgn0003250
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: NP_571661.1
• Gene: valopa / 58109
• ZFINID: ZDB-GENE-000427-4
• Length: 377
• Species: Danio rerio
• Alignment Length: 337
• Identity: 79/337 - (23%)
• Similarity: 141/337 - (41%)
• Gaps: 24/337 - (7%)

  Fly    51 ASMHYMLGVFYIFLFCASTVG-NGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK-APIFIYN 113
            |..:|.:....:|:..|.::. |..|:.:....:.||.|.|..::||::.|.::.|. ..|....
Zfish    26 APWNYSVLAALMFVVTALSLSENFTVMLVTFRFQQLRQPLNYIIVNLSLADFLVSLTGGSISFLT 90

  Fly   114 SFHRGFALGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPM-NRNMTFTKAVIMNIIIWL 177
            ::|..|.||...|.:.....::.||.|..:.|.:.::|:.||.:|: |..:....|.:..:.:|.
Zfish    91 NYHGYFFLGKWACVLEGFAVTFFGIVALWSLAVLAFERFFVICRPLGNIRLRGKHAALGLVFVWS 155

  Fly   178 YCTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVG 242
            :...|.|.|:.. |..:......|:|..::.|.||....|:.|:|...|:.|..:|:..|.
Zfish   156 FSFIWTVPPVLG-WSSYTVSRIGTTCEPNWYSGNFHDHTFIITLFSTCFIFPLGVIIVCYC---- 215

  Fly   243 HVFSHEKALREQAKKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGD 307
                  |.:|:..|..|......|..|    .|.::.:..:.:...|.|:||||...|:|.....
Zfish   216 ------KLIRKLRKVSNTHGRLGNARK----PERQVTRMVVVMIVAFMVAWTPYAAFSIIITAHP 270

  Fly   308 KSLLTPGATMIPACTCKLVACIDPFVYAISHPRYR------LELQKRCPWLGVNEKSGEISSAQS 366
            ...:.|....|||...|..|..:|.:|...:.::|      |...|.....|.|.::.|.:...|
Zfish   271 SMHVDPRLAAIPAFVAKTAAVYNPIIYVFMNKQFRKCLVQLLSCSKVTVVEGNNNQTTERAGMTS 335

  Fly   367 TTTQEQQQTTAA 378
            .:...:....||
Zfish   336 GSNTGEMSAIAA 347

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh4	NP_476701.1	7tmA_photoreceptors_insect	55..345	CDD:320207	71/298 (24%)
		TM helix 1	56..82	CDD:320207	4/26 (15%)
		TM helix 2	89..114	CDD:320207	6/25 (24%)
		TM helix 3	126..156	CDD:320207	7/29 (24%)
		TM helix 4	166..186	CDD:320207	4/19 (21%)
		TM helix 5	214..243	CDD:320207	7/28 (25%)
		TM helix 6	273..303	CDD:320207	8/29 (28%)
		TM helix 7	313..338	CDD:320207	8/24 (33%)
valopa	NP_571661.1	7tmA_VA_opsin	18..308	CDD:320210	71/296 (24%)
		TM helix 1	32..58	CDD:320210	4/25 (16%)
		TM helix 2	65..92	CDD:320210	6/26 (23%)
		TM helix 3	103..133	CDD:320210	7/29 (24%)
		TM helix 4	146..164	CDD:320210	4/17 (24%)
		TM helix 5	191..221	CDD:320210	9/39 (23%)
		TM helix 6	236..266	CDD:320210	9/33 (27%)
		TM helix 7	276..301	CDD:320210	8/24 (33%)