DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh4 and opn7a

DIOPT Version :9

Sequence 1:NP_476701.1 Gene:Rh4 / 39887 FlyBaseID:FBgn0003250 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001303877.1 Gene:opn7a / 570397 ZFINID:ZDB-GENE-140106-15 Length:455 Species:Danio rerio


Alignment Length:327 Identity:79/327 - (24%)
Similarity:144/327 - (44%) Gaps:40/327 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLKA-PIFIYN 113
            |.:....:|:.|......|..||.|::::....|.|..|:..|::|||:.||.|.|.. |:.:.:
Zfish    14 PVAADITVGIVYSLFGVCSLCGNSMLLYVSYKKKHLLKPAEFFIVNLAISDLGMTLSLYPLAVTS 78

  Fly   114 SFHRGFALGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNRN-MTFTKAVIMNIIIWL 177
            |....:..|.|.|.|:|..|...||.:..|...:.......:..|::.| .::....::.:..|.
Zfish    79 SIAHRWLYGRTVCVIYAFCGVLFGICSLTTLTILSTVCCLKVCYPLHGNRFSYEHGRMLIVCAWA 143

  Fly   178 YCTPWVVLPLTQFWDRFVPEGYLTSCSFDYL--SDNFDTRLFVGTIFFFSFVCPTLMILYYYSQI 240
            |...:...||.. |.::.||.|.|:|..|:.  :.|...|.:...:|...::.|.::|:..|::|
Zfish   144 YSLVFACSPLAH-WGQYGPEPYGTACCIDWAWSNQNSVARSYTTVLFIACYLVPCVIIIISYTRI 207

  Fly   241 VGHVFSHEKALRE----QAKKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSL 301
            :..|....:|:.:    |.:..|::::              |.|.::.:|..||.:|:||.::|:
Zfish   208 LITVRESRRAVEQHVSAQTRMGNIQTI--------------IVKLSVAVCIGFFTAWSPYALVSM 258

  Fly   302 IGAFGDKSLLTPGATMIPACTCKLVACIDPFVYAISHPRYRLELQK---------------RC-- 349
            ..|||....:.|.|..:||...|.....:|.:|.:..|.:|..|.|               :|  
Zfish   259 WAAFGHFDDIPPMAFAVPAMFAKSSTLYNPLIYLLLKPNFRHLLCKDMRSLRGVCMHHCLCQCFP 323

  Fly   350 PW 351
            ||
Zfish   324 PW 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh4NP_476701.1 7tmA_photoreceptors_insect 55..345 CDD:320207 73/297 (25%)
TM helix 1 57..81 CDD:320207 6/23 (26%)
TM helix 2 90..111 CDD:320207 9/21 (43%)
TM helix 3 127..149 CDD:320207 6/21 (29%)
TM helix 4 170..186 CDD:320207 2/15 (13%)
TM helix 5 215..238 CDD:320207 4/22 (18%)
TM helix 6 279..301 CDD:320207 7/21 (33%)
TM helix 7 313..338 CDD:320207 7/24 (29%)
opn7aNP_001303877.1 7TM_GPCR_Srd 23..235 CDD:304638 51/226 (23%)
7tm_1 35..291 CDD:278431 67/270 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704940at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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