DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh4 and parapinopsinb

DIOPT Version :10

Sequence 1:NP_476701.1 Gene:Rh4 / 39887 FlyBaseID:FBgn0003250 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001428334.1 Gene:parapinopsinb / 368725 ZFINID:ZDB-GENE-030616-134 Length:339 Species:Danio rerio


Alignment Length:352 Identity:86/352 - (24%)
Similarity:138/352 - (39%) Gaps:50/352 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 GWNVPPDQIQYIPEHWLTQLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMF 92
            |..||..:..:|            ::..::.||.|    .|.|.|..||.:....|.||.|.|..
Zfish    19 GLKVPLPRAGFI------------TLSLLMAVFSI----TSVVLNATVIVVTLRHKQLRQPLNFA 67

  Fly    93 VLNLAVFDLIMCL--KAPIFIYNSFHRGFAL-GNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNV 154
            ::||||.||...|  ..|..:.|:.  |:.: |...|.:.....::.||.|..|.|.|..:|..|
Zfish    68 LVNLAVADLGTTLTGSVPSVVTNAV--GYYITGRIGCVLEGFCVAFFGISALCTVALIAVERLFV 130

  Fly   155 ITKPMNRNMTFTKAVIMNIII--WLYCTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNFDTRLF 217
            :.:|:. ::||........::  ||:...|...||.. |..:..||..|||...:.|.......:
Zfish   131 VCRPLG-SITFQSRHAAGGLLSCWLWSLIWNTPPLLG-WGSYQLEGAGTSCGPHWQSRELRDVSY 193

  Fly   218 VGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLRSNVDKSKETAEIRIAKAA 282
            :...|...|..|..:||..||.::       ..||:.||.....:.|         ||.|:|...
Zfish   194 IICYFSVCFAVPFAIILVSYSWLL-------YTLRQVAKVGGGAAAR---------AEARVAWMV 242

  Fly   283 ITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMIPACTCKLVACIDPFVYAISH---PRYRLE 344
            :.:...|.|||.||..::|......:..|.....::|....|.....:|.:|...:   .||.:.
Zfish   243 VMMVLAFLVSWLPYAALALTVVSKPEVQLAVLVKVLPIYMAKSSTVYNPLIYIYMNKQFQRYAIP 307

  Fly   345 --LQKRCPWLGVNEKSGEISSAQSTTT 369
              :..:.||    ....::|..|:..:
Zfish   308 FLMCGKDPW----PSEDDVSEVQTVVS 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh4NP_476701.1 7tmA_photoreceptors_insect 55..345 CDD:320207 78/299 (26%)
TM helix 1 56..82 CDD:320207 8/25 (32%)
TM helix 2 89..114 CDD:320207 9/26 (35%)
TM helix 3 126..156 CDD:320207 9/29 (31%)
TM helix 4 166..186 CDD:320207 3/21 (14%)
TM helix 5 214..243 CDD:320207 7/28 (25%)
TM helix 6 273..303 CDD:320207 11/29 (38%)
TM helix 7 313..338 CDD:320207 4/24 (17%)
parapinopsinbNP_001428334.1 None

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