DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh4 and opn4.1

DIOPT Version :10

Sequence 1:NP_476701.1 Gene:Rh4 / 39887 FlyBaseID:FBgn0003250 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_840074.2 Gene:opn4.1 / 352918 ZFINID:ZDB-GENE-030314-2 Length:500 Species:Danio rerio


Alignment Length:375 Identity:118/375 - (31%)
Similarity:191/375 - (50%) Gaps:29/375 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 EARSSGNGDLQFLGWNVPPDQIQYIPEHWLTQLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIF 79
            |:..|.|..|..:..:.|.....:.|.|....::.|...||::|...:.:.....:||.:|:::|
Zfish    25 ESLGSRNYKLLHVPVHGPTHSHHHDPPHPFPTVDVPDHAHYIIGSVILIVGITGVIGNALVVYVF 89

  Fly    80 STSKSLRTPSNMFVLNLAVFDLIMCL-KAPIFIYNSFHRGFALGNTWCQIFASIGSYSGIGAGMT 143
            ..|::|||..|||::||||.|.:|.: ::|:|...|.||.:..|...|:::|..|:..||.:.||
Zfish    90 CRSRTLRTAGNMFIVNLAVADFLMSVTQSPVFFAASLHRRWVFGERPCELYAFCGALFGICSMMT 154

  Fly   144 NAAIGYDRYNVITKPMN--RNMTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYLTSCSFD 206
            ..||..||...||:|:.  ..::..||..:.:::|||...|.:.|... |..:||||..||||:|
Zfish   155 LTAIAADRCLAITQPLALVSRVSRRKAGAVLVVVWLYSLGWSLPPFFG-WSAYVPEGLQTSCSWD 218

  Fly   207 YLSDNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALRE----QAKKMNVESLRSNV 267
            |::.....|.:...:|.|.|..|..:|...|..|...:.:..|.:||    :..|: .|.:::  
Zfish   219 YMTFTPSVRAYTILLFVFVFFIPLGIIGSCYFAIFQTIRAAGKEIRELDCGETHKV-YERMQN-- 280

  Fly   268 DKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMIPACTCKLVACIDPF 332
                   |.::||.|:.:..||.:||:||.|::|....|....|||....:||...|..|..:|.
Zfish   281 -------EWKMAKVALVVIVLFIISWSPYSVVALTATAGYSHFLTPYMNSVPAVIAKASAIHNPI 338

  Fly   333 VYAISHPRYRLELQKRC----PWLGVNEK-------SGEISSAQSTTTQE 371
            :|||:||:||:.:.:..    |.|.|.||       ||.:||.:.|.|.:
Zfish   339 IYAITHPKYRVAIARYIPVLRPILRVKEKDLRSSFSSGSVSSRRPTLTSQ 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh4NP_476701.1 7tmA_photoreceptors_insect 55..345 CDD:320207 98/296 (33%)
TM helix 1 56..82 CDD:320207 5/25 (20%)
TM helix 2 89..114 CDD:320207 11/25 (44%)
TM helix 3 126..156 CDD:320207 11/29 (38%)
TM helix 4 166..186 CDD:320207 6/19 (32%)
TM helix 5 214..243 CDD:320207 8/28 (29%)
TM helix 6 273..303 CDD:320207 12/29 (41%)
TM helix 7 313..338 CDD:320207 9/24 (38%)
opn4.1NP_840074.2 7tmA_Melanopsin 65..351 CDD:320458 98/296 (33%)
TM helix 1 66..92 CDD:320458 5/25 (20%)
TM helix 2 99..125 CDD:320458 11/25 (44%)
TM helix 3 137..167 CDD:320458 11/29 (38%)
TM helix 4 179..201 CDD:320458 7/21 (33%)
TM helix 5 226..256 CDD:320458 8/29 (28%)
TM helix 6 279..309 CDD:320458 12/38 (32%)
TM helix 7 319..344 CDD:320458 9/24 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 404..428
Blue background indicates that the domain is not in the aligned region.

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