Protein Alignment Rh4 and Rrh

DIOPT Version :9

• Sequence 1: NP_476701.1
• Gene: Rh4 / 39887
• FlyBaseID: FBgn0003250
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: XP_006232065.1
• Gene: Rrh / 310869
• RGDID: 1308948
• Length: 337
• Species: Rattus norvegicus
• Alignment Length: 296
• Identity: 67/296 - (22%)
• Similarity: 137/296 - (46%)
• Gaps: 21/296 - (7%)

  Fly    52 SMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL-IMCLKAPIFIYNSF 115
            |.|.::..:.|.....|.:.|.:|:.||...|.||||:|..::|||..|: :..:..|:...:..
  Rat    23 SEHSIIAAYLIVAGIISILSNIIVLGIFIKYKELRTPTNAVIINLAFTDIGVSSIGYPMSAASDL 87

  Fly   116 HRGFALGNTWCQIFASIGSYSG-IGAGMTNAAIGYDRYNVITKP-MNRNMTFTKAVIMNIIIWLY 178
            |..:..|:..||::|.:..:.| :..|:. ..:..|||..|:.| :.|.||....:.|.:..|:.
  Rat    88 HGSWKFGHAGCQVYAGLNIFFGMVSIGLL-TVVALDRYLTISCPDVGRRMTGNTYLSMVLGAWIN 151

  Fly   179 CTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNFDTRLFVGTIFFFSFVCP-TLMILYYYSQIVG 242
            ...|.::|:.. |..:.|:....:|:.::..::.....:...:...:|:.| |:|...||
  Rat   152 GLFWALMPIVG-WASYAPDPTGATCTINWRKNDTSFVSYTMMVIVVNFIVPLTVMFYCYY----- 210

  Fly   243 HVFSHEKALREQAKKMNVESLRSNVDKSKETA-EIRIAKAAITICFLFFVSWTPYGVMSLIGAFG 306
            ||        .|:.:::..| ......:::.| :..:.|.::.:..:|.::|:||.|:.|...||
  Rat   211 HV--------SQSMRLSAAS-NCTTHLNRDWAHQADVTKMSVMMILMFLLAWSPYSVVCLWACFG 266

  Fly   307 DKSLLTPGATMIPACTCKLVACIDPFVYAISHPRYR 342
            :...:.|...:|.....|.....:|.:|..::.::|
  Rat   267 NPKKIPPSLAIIAPLFAKSSTFYNPCIYVAANKKFR 302

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh4	NP_476701.1	7tmA_photoreceptors_insect	55..345	CDD:320207	65/293 (22%)
		TM helix 1	57..81	CDD:320207	6/23 (26%)
		TM helix 2	90..111	CDD:320207	6/21 (29%)
		TM helix 3	127..149	CDD:320207	4/22 (18%)
		TM helix 4	170..186	CDD:320207	3/15 (20%)
		TM helix 5	215..238	CDD:320207	5/23 (22%)
		TM helix 6	279..301	CDD:320207	6/21 (29%)
		TM helix 7	313..338	CDD:320207	5/24 (21%)
Rrh	XP_006232065.1	7tm_1	43..294	CDD:278431	61/266 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG48050
OrthoDB	1	1.010	-	-		D310934at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.930