Protein Alignment Rh4 and Rgr

DIOPT Version :10

• Sequence 1: NP_476701.1
• Gene: Rh4 / 39887
• FlyBaseID: FBgn0003250
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: XP_038950404.1
• Gene: Rgr / 306307
• RGDID: 1309174
• Length: 300
• Species: Rattus norvegicus
• Alignment Length: 312
• Identity: 80/312 - (25%)
• Similarity: 132/312 - (42%)
• Gaps: 55/312 - (17%)

  Fly    72 NGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLKAPIFIYNSF---------HRGFALGNTWCQ 127
            ||:.|:.|..:..||||||:.||:||:.|..:.|.|.:...:|.         ||.:..|:..|:
  Rat    34 NGLTIFSFCKTPDLRTPSNLLVLSLALADTGISLNALVAAVSSLLRVILPIVSHRRWPHGSEGCR 98

  Fly   128 IFASIGSYSGIGAGMTNAAIGYDRY-NVITKPMNRNMTFTKAVIMNIIIWLYCTPWVVLPLTQFW 191
            :....|..:.:.:...:|||.:.|| :..|:   |.:.:..|:.:.:.:||....|..||| ..|
  Rat    99 VHGFQGFATALASICGSAAIAWGRYHHYCTR---RQLAWDTAIPLVLFVWLSSAFWASLPL-MGW 159

  Fly   192 DRFVPEGYLTSCSFDYLSDNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAK 256
            ..:..|...|.|:.||...:.:...|:.|:.||:|:.| |.|.:     ..:.|..:|..|....
  Rat   160 GHYDYEPVGTCCTLDYSRGDRNFISFLFTMAFFNFLVP-LFITH-----TSYRFMEQKLSRSGHL 218

  Fly   257 KMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMIPAC 321
            ::|.            |...|          :..:.|.||.::.|..|..|.|.::|...|:||.
  Rat   219 QVNT------------TLPGR----------MLLLGWGPYALLYLYAAVADVSFISPKLQMVPAL 261

  Fly   322 TCKLVACIDPFVYAISHPRYRLELQKRCPWLGVNEKSGEISSAQSTTTQEQQ 373
            ..|.:..|:...||:     |.|:..|..|        :..|||.:.....|
  Rat   262 IAKTMPTINAINYAL-----RSEMVCRGTW--------QCRSAQKSKQDRTQ 300

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh4	NP_476701.1	7tmA_photoreceptors_insect	55..345	CDD:320207	73/282 (26%)
		TM helix 1	56..82	CDD:320207	4/9 (44%)
		TM helix 2	89..114	CDD:320207	9/24 (38%)
		TM helix 3	126..156	CDD:320207	7/30 (23%)
		TM helix 4	166..186	CDD:320207	4/19 (21%)
		TM helix 5	214..243	CDD:320207	8/28 (29%)
		TM helix 6	273..303	CDD:320207	6/29 (21%)
		TM helix 7	313..338	CDD:320207	8/24 (33%)
Rgr	XP_038950404.1	7tmA_Retinal_GPR	17..286	CDD:320200	75/288 (26%)
		TM helix 1	18..44	CDD:320200	4/9 (44%)
		TM helix 2	51..77	CDD:320200	9/25 (36%)
		TM helix 3	97..127	CDD:320200	7/29 (24%)
		TM helix 4	135..155	CDD:320200	4/19 (21%)
		TM helix 5	182..211	CDD:320200	9/34 (26%)
		TM helix 6	213..243	CDD:320200	8/51 (16%)
		TM helix 7	253..278	CDD:320200	8/29 (28%)