Protein Alignment Rh4 and opn1sw2

DIOPT Version :10

• Sequence 1: NP_476701.1
• Gene: Rh4 / 39887
• FlyBaseID: FBgn0003250
• Length: 378
• Species: Drosophila melanogaster
• Sequence 2: NP_571267.1
• Gene: opn1sw2 / 30435
• ZFINID: ZDB-GENE-990604-40
• Length: 354
• Species: Danio rerio
• Alignment Length: 326
• Identity: 89/326 - (27%)
• Similarity: 142/326 - (43%)
• Gaps: 41/326 - (12%)

  Fly    57 LGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL-IMCLKAPIFIYNSFHRGFA 120
            :..|.:|||.|.|..|.:.|......|.||:..|..::|||:.:| :....:.:..|..:.:.|.
Zfish    47 MSAFMLFLFIAGTAINVLTIVCTIQYKKLRSHLNYILVNLAISNLWVSVFGSSVAFYAFYKKYFV 111

  Fly   121 LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNRNMTF-TKAVIMNIIIWLYCTPWVV 184
            .|...|:|.....:..|:.:..:.|.:..:|:.||.||:. |.|| |...|...|:     ||.:
Zfish   112 FGPIGCKIEGFTSTIGGMVSLWSLAVVALERWLVICKPLG-NFTFKTPHAIAGCIL-----PWCM 170

  Fly   185 -----LPLTQFWDRFVPEGYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVG 242
                 ||....|.|::|||...||..|:.:.|  |:...:|..:|.|.|..|...|::.|.|::.
Zfish   171 ALAAGLPPLLGWSRYIPEGLQCSCGPDWYTTNNKFNNESYVMFLFCFCFAVPFSTIVFCYGQLLI 235

  Fly   243 HVFSHEKALREQAKKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYG-----VMSLI 302
            .:....||..:.|              |.:.||..:.|..:.:.|.|.:.|.||.     |:|..
Zfish   236 TLKLAAKAQADSA--------------STQKAEREVTKMVVVMVFGFLICWGPYAIFAIWVVSNR 286

  Fly   303 GAFGDKSLLTPGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGVNEKSGEISSAQST 367
            ||..|..|.|     ||:|.||.....:|.:|.:.:.::|..:.|..  ...|.:..|.||:...
Zfish   287 GAPFDLRLAT-----IPSCLCKASTVYNPVIYVLMNKQFRSCMMKMV--FNKNIEEDEASSSSQV 344

  Fly   368 T 368
            |
Zfish   345 T 345

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh4	NP_476701.1	7tmA_photoreceptors_insect	55..345	CDD:320207	83/301 (28%)
		TM helix 1	56..82	CDD:320207	8/24 (33%)
		TM helix 2	89..114	CDD:320207	6/25 (24%)
		TM helix 3	126..156	CDD:320207	6/29 (21%)
		TM helix 4	166..186	CDD:320207	5/24 (21%)
		TM helix 5	214..243	CDD:320207	8/28 (29%)
		TM helix 6	273..303	CDD:320207	10/34 (29%)
		TM helix 7	313..338	CDD:320207	7/24 (29%)
opn1sw2	NP_571267.1	7tmA_SWS2_opsin	45..324	CDD:320205	83/301 (28%)
		TM helix 1	46..72	CDD:320205	8/24 (33%)
		TM helix 2	79..106	CDD:320205	6/26 (23%)
		TM helix 3	117..147	CDD:320205	6/29 (21%)
		TM helix 4	158..180	CDD:320205	6/26 (23%)
		TM helix 5	207..237	CDD:320205	8/29 (28%)
		TM helix 6	252..282	CDD:320205	8/29 (28%)
		TM helix 7	292..317	CDD:320205	9/29 (31%)