DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh4 and OPN1MW

DIOPT Version :10

Sequence 1:NP_476701.1 Gene:Rh4 / 39887 FlyBaseID:FBgn0003250 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_000504.1 Gene:OPN1MW / 2652 HGNCID:4206 Length:364 Species:Homo sapiens


Alignment Length:338 Identity:87/338 - (25%)
Similarity:141/338 - (41%) Gaps:31/338 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLI-MCLKAPIFIYN 113
            |..::::..|:.||:..||...||:|:......|.||.|.|..::||||.||. ..:.:.|.:.|
Human    49 PRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIASTISVVN 113

  Fly   114 SFHRGFALGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNRNMTF-TKAVIMNIII-W 176
            ..:..|.||:..|.:.....|..||....:.|.|.::|:.|:.||.. |:.| .|..|:.|.. |
Human   114 QVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFG-NVRFDAKLAIVGIAFSW 177

  Fly   177 LYCTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNF--DTRLFVGTIFFFSFVCPTLMILYYYSQ 239
            ::...|...|:.. |.|:.|.|..|||..|..|.:.  ..:.::..:.....:.|..:|:..|.|
Human   178 IWAAVWTAPPIFG-WSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQ 241

  Fly   240 IVGHVFSHEKALREQAKKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGA 304
            :       ..|:|..||:.. ||      :|.:.||..:.:..:.:...|...|.||...:...|
Human   242 V-------WLAIRAVAKQQK-ES------ESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAA 292

  Fly   305 FGDKSLLTPGATMIPACTCKLVACIDPFVYAISHPRYR---LELQKRCPWLGVNEKSG-EISSAQ 365
            ........|....:||...|.....:|.:|...:.::|   |:|      .|.....| |:|||.
Human   293 ANPGYPFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQL------FGKKVDDGSELSSAS 351

  Fly   366 STTTQEQQQTTAA 378
            .|........:.|
Human   352 KTEVSSVSSVSPA 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh4NP_476701.1 7tmA_photoreceptors_insect 55..345 CDD:320207 77/297 (26%)
TM helix 1 56..82 CDD:320207 8/25 (32%)
TM helix 2 89..114 CDD:320207 8/25 (32%)
TM helix 3 126..156 CDD:320207 8/29 (28%)
TM helix 4 166..186 CDD:320207 5/20 (25%)
TM helix 5 214..243 CDD:320207 4/28 (14%)
TM helix 6 273..303 CDD:320207 6/29 (21%)
TM helix 7 313..338 CDD:320207 6/24 (25%)
OPN1MWNP_000504.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
Required for 11-cis-retinal regeneration. /evidence=ECO:0000269|PubMed:30948514 17..43
7tm_GPCRs 42..333 CDD:475119 77/299 (26%)
TM helix 1 56..80 CDD:410628 8/23 (35%)
TM helix 2 89..111 CDD:410628 8/21 (38%)
TM helix 3 127..149 CDD:410628 5/21 (24%)
TM helix 4 171..187 CDD:410628 3/15 (20%)
TM helix 5 217..240 CDD:410628 2/22 (9%)
TM helix 6 267..289 CDD:410628 4/21 (19%)
TM helix 7 301..326 CDD:410628 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.

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